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GenomicRanges RleList

23 days ago • updated 22 days ago story.benjamin ▴ 20

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Views IRanges GRanges RleList

updated 3.6 years ago by Mike Smith ★ 6.6k • written 3.6 years ago by Assa Yeroslaviz ★ 1.5k

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iranges s4vectors rle rlelist

6.9 years ago endrebak85 ▴ 40

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bug genomicranges granges rlelist coverage

updated 7.2 years ago by Hervé Pagès 16k • written 7.2 years ago by xiaotong.yao23 ▴ 10

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delayedarray rlelist rle

updated 7.5 years ago by Peter Hickey ▴ 750 • written 7.5 years ago by davide risso ▴ 980

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genomicranges biocgenerics rlelist genomicvars iranges

updated 7.6 years ago by Hervé Pagès 16k • written 7.6 years ago by Devin King ▴ 20

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rlelist ifelse

updated 8.3 years ago by theobroma22 ▴ 10 • written 8.3 years ago by maltethodberg ▴ 180

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Views genomicalignments IRangesList coverage RleList

updated 8.8 years ago by Hervé Pagès 16k • written 8.8 years ago by ccanchaya • 0

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Comment: Unable to install a forged BSgenome package by James W. MacDonald 68k

R doesn't like the name of your package. I would bet that it's the minus sign, so maybe remove that from the name of the package and from t…

Comment: Unable to install a forged BSgenome package by JABEZ RAJU • 0

install.packages("E:/PhD data/RNAseq/TSS/BSgenome.Hnudivirus-2.NCBI.ViralProj14215", repos = NULL, type = "source") Installing package into…

Comment: DESeq2 with proteomics data by wook2014 • 0

You may need to do NA imputation before give the data to DEseq2 and there are study on DEseq2 performance on proteomics data, like :https:/…

Answer: Unable to install a forged BSgenome package by James W. MacDonald 68k

Add a repos = NULL to `install.packages`. You may also need to either move the file to a dir that doesn't have a space in the name or you […

Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an by James W. MacDonald 68k

Have you figured out how to do this using tidy grammar? Using non-tidy grammar is quite simple, and perhaps you already know how to do that…

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Answer: Unable to install a forged BSgenome package

Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

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