Bioconductor SCRNA

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DESeq2 Scrna scRNAseq

2.8 years ago RDoc ▴ 10

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DropletUtils emptyDrops scRNA scRNAseq 10x

21 months ago • updated 20 months ago Peter Hickey ▴ 740

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scRNA zinbwave batch IntegratedData

updated 3.6 years ago by davide risso ▴ 950 • written 3.6 years ago by Assa Yeroslaviz ★ 1.5k

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scRNAseq scrna paireddesign edgeR pseudobulking

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by garcia • 0

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scrna scrnaseq differential gene expression

updated 6.5 years ago by davide risso ▴ 950 • written 6.5 years ago by d.depledge • 0

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Seurat scRNA debugging exceptions unit-test

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by moldach ▴ 20

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scater scrna

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by hrishi27n ▴ 20

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scRNAseq quickcluster scRNA scran

4 months ago ruba-mahmoud • 0

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679

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scrna scRNAseq

updated 6 months ago by Gabriella • 0 • written 14 months ago by sarah.jobbins • 0

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894

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SCRNA

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by sumetha • 0

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MAST scRNA GSEA

updated 6.8 years ago by Andrew_McDavid ▴ 270 • written 6.8 years ago by siajunren • 0

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scRNA scRNAseq

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by Omer • 0

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scRNAseq scRNA batchelor BatchEffect

updated 3.5 years ago by Aaron Lun ★ 28k • written 3.5 years ago by Adrien • 0

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scRNA monocle packages Tutorial

4.7 years ago 444579004 • 0

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scran Normalization scRNA BatchEffect

16 months ago r_grau ▴ 10

15 results • Page 1 of 1

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Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Comment: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…

Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0

Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…

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A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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