Bioconductor SCRNA

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DropletUtils emptyDrops scRNA scRNAseq 10x

21 months ago Peter Hickey ▴ 740

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1.1k

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scRNAseq scrna paireddesign edgeR pseudobulking

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by garcia • 0

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2.3k

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DESeq2 Scrna scRNAseq

2.8 years ago RDoc ▴ 10

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MAST scRNA GSEA

updated 6.8 years ago by Andrew_McDavid ▴ 270 • written 6.8 years ago by siajunren • 0

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scRNAseq scRNA batchelor BatchEffect

updated 3.5 years ago by Aaron Lun ★ 28k • written 3.5 years ago by Adrien • 0

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1.5k

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scrna scrnaseq differential gene expression

updated 6.5 years ago by davide risso ▴ 950 • written 6.5 years ago by d.depledge • 0

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scRNA zinbwave batch IntegratedData

updated 3.7 years ago by davide risso ▴ 950 • written 3.7 years ago by Assa Yeroslaviz ★ 1.5k

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scater scrna

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by hrishi27n ▴ 20

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890

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scRNAseq quickcluster scRNA scran

5 months ago ruba-mahmoud • 0

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687

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scran Normalization scRNA BatchEffect

16 months ago r_grau ▴ 10

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902

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SCRNA

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by sumetha • 0

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695

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scrna scRNAseq

updated 6 months ago by Gabriella • 0 • written 14 months ago by sarah.jobbins • 0

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426

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scRNA scRNAseq

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by Omer • 0

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Seurat scRNA debugging exceptions unit-test

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by moldach ▴ 20

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4.7k

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scRNA monocle packages Tutorial

4.7 years ago 444579004 • 0

15 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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