Bioconductor SCRNA

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DESeq2 Scrna scRNAseq

2.8 years ago RDoc ▴ 10

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DropletUtils emptyDrops scRNA scRNAseq 10x

21 months ago Peter Hickey ▴ 740

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1.8k

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scRNA zinbwave batch IntegratedData

updated 3.7 years ago by davide risso ▴ 950 • written 3.7 years ago by Assa Yeroslaviz ★ 1.5k

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scRNAseq scrna paireddesign edgeR pseudobulking

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by garcia • 0

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scrna scrnaseq differential gene expression

updated 6.5 years ago by davide risso ▴ 950 • written 6.5 years ago by d.depledge • 0

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Seurat scRNA debugging exceptions unit-test

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by moldach ▴ 20

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scater scrna

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by hrishi27n ▴ 20

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884

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scRNAseq quickcluster scRNA scran

5 months ago ruba-mahmoud • 0

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693

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scrna scRNAseq

updated 6 months ago by Gabriella • 0 • written 14 months ago by sarah.jobbins • 0

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902

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SCRNA

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by sumetha • 0

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MAST scRNA GSEA

updated 6.8 years ago by Andrew_McDavid ▴ 270 • written 6.8 years ago by siajunren • 0

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426

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scRNA scRNAseq

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by Omer • 0

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scRNAseq scRNA batchelor BatchEffect

updated 3.5 years ago by Aaron Lun ★ 28k • written 3.5 years ago by Adrien • 0

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scRNA monocle packages Tutorial

4.7 years ago 444579004 • 0

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685

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scran Normalization scRNA BatchEffect

16 months ago r_grau ▴ 10

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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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Popular Question to Johannes Rainer ★ 2.0k