Showing : Survival • reset
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I need to calculate the survival rate of TCGA databases
TCGAbiolinks Survival
updated 3 months ago by ▴ 730 • written 3 months ago by • 0
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590
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KM Plot for gene of interest (e.g. TP53) using TCGA-PAAD dataset
Survival TCGAbiolinks R PAAD
14 months ago Manav • 0
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plots in gwasurvivr
gwasurvivr r survival cox
3.7 years ago laura.martinez.campelo • 0
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6
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5.4k
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Issues installing DESeq2, installation path not writable, package: survival
deseq2 survival
updated 18 months ago by • 0 • written 3.9 years ago by • 0
1
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How to compute 95%CI after having C-index value?
survival nomogram cph 95CI
4.3 years ago huynguyen96.dnu ▴ 30
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0
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585
views
Estimating survival function with left truncation?
Icens Survival Left-truncation Interval-Censored
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
4
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7
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4.2k
views
DESeq2 for survival analysis
deseq2 survival rlog transformation
6.5 years ago array chip ▴ 420
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1.2k
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Need help determine optimal argument value on a rbsurv model
rbsurv microarray survival
6.6 years ago JackieMe • 0
2
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1
reply
1.7k
views
error/warning message while doing kmTCGA survival plot
RTCGA survival kmTCGA
updated 7.1 years ago by ▴ 10 • written 7.2 years ago by ▴ 30
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866
views
Error with Reportingtools using ENSEMBL gene ID
reporting tools modifyDF survival
7.9 years ago cagenet34 ▴ 20
0
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1
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1.5k
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 9.0 years ago by • 0 • written 17.4 years ago by ▴ 170
0
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1
reply
2.8k
views
CanceR: Survival plots
cancer gui survival Kaplan-Meier
9.2 years ago • updated 9.1 years ago kmezhoud ▴ 10
0
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1
reply
1.6k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
10.4 years ago David Winsemius ▴ 40
0
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2
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4.6k
views
Problem installing \'survival\' package/ Fix request + other options?
Survival Survival
updated 10.9 years ago by 66k • written 10.9 years ago by ★ 13k
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1
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1.7k
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Fwd: feature weights in 'superpc' package
Survival ASSIGN Survival ASSIGN
updated 11.0 years ago by ★ 4.2k • written 11.0 years ago by ▴ 10
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10
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2.4k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
11.2 years ago Julie Zhu ★ 4.3k
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0
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3.9k
views
ComBat
Transcription Genetics Pathways Network Survival Cancer Breast Colon Kidney Leukemia HIV
11.6 years ago SSc Array Core ▴ 10
0
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1
reply
3.3k
views
undefined columns selected error when using bagging{ipred}
Survival Survival
updated 11.7 years ago by ★ 6.8k • written 11.7 years ago by ★ 13k
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2
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1.8k
views
Kaplan Meier curve
Survival Survival
updated 11.9 years ago by ★ 2.0k • written 11.9 years ago by ▴ 200
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0
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2.1k
views
survival prediction from multiple genes
Survival Ovarian Survival Ovarian
12.2 years ago Ahmet ZEHIR ▴ 50
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0
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1.0k
views
MLInterfaces, CMA, or Caret for censored survival?
Survival Survival
12.4 years ago Levi Waldron ▴ 10
0
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0
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997
views
globaltest 5.6.1 bug fix
Survival globaltest Survival globaltest
12.8 years ago Goeman, J.J. MSTAT ▴ 150
0
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1
reply
1.2k
views
cox PH model - KM curve
Survival phenoTest Survival phenoTest
updated 12.9 years ago by ★ 2.0k • written 12.9 years ago by ▴ 330
0
votes
3
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1.9k
views
[Bioc-sig-seq] Bioconductor 2.8 is released
SNP Sequencing miRNA Microarray Annotation Normalization Pathways Preprocessing Survival
updated 13.1 years ago by ▴ 310 • written 13.1 years ago by ★ 8.2k
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0
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917
views
booklet on using R for biomedical statistics
Survival Survival
13.4 years ago Coghlan, Avril ▴ 190
0
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0
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1.0k
views
globaltest 5.0.2
Survival globaltest Survival globaltest
14.4 years ago Goeman, J.J. MSTAT ▴ 150
0
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0
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948
views
2009 Courses***R/S-PLUS Advanced & Fundamentals - January 2009. Also check out our New&Emerging Courses.
Clustering Survival Clustering Survival
15.4 years ago sue@xlsolutions-corp.com ▴ 570
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1
reply
2.4k
views
forward conditional Cox and logistic regression
Genetics Regression Survival Genetics Regression Survival
updated 15.5 years ago by ★ 2.3k • written 15.5 years ago by ▴ 130
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2
replies
1.2k
views
applying coxfilter after LIMMA
Survival Cancer limma Survival Cancer limma
updated 15.5 years ago by 66k • written 15.5 years ago by ▴ 330
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3
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2.1k
views
gene expression data followup
Survival Cancer Survival Cancer
updated 15.5 years ago by 66k • written 15.5 years ago by ▴ 330
0
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3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.6 years ago Patrick Aboyoun ★ 1.6k
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0
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1.1k
views
affycoretools vennSelect problem
Annotation GO Survival probe annotate genefilter affy graph limma gcrma annaffy RBGL
15.9 years ago Nick Henriquez ▴ 20
0
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2
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1.2k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 15.9 years ago by 66k • written 15.9 years ago by ▴ 30
0
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2
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1.4k
views
'Factorial Design' package question
Survival cdf multtest affy factDesign biomaRt Survival cdf multtest affy factDesign
16.0 years ago Glazko, Galina ▴ 350
0
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0
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1.9k
views
Significance Analysis of Microarrays (SAM)
Survival Survival
16.0 years ago Eleni Christodoulou ▴ 150
0
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0
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1.2k
views
SECOND ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray Annotation Normalization GO Visualization Classification Clustering Survival GO
16.4 years ago Ana Conesa ▴ 340
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0
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1.1k
views
Inf values using SAM (package=siggenes)
Annotation Survival Cancer genefilter affy limma maDB affyio Annotation Survival Cancer
16.4 years ago Holger Schwender ▴ 900
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0
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1.1k
views
Inf values using SAM (package=siggenes)
Survival Cancer affy limma maDB affyio Survival Cancer affy limma maDB affyio
16.4 years ago Julian Lee ▴ 140
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0
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1.1k
views
MTP error
GO Survival multtest affy affydata annaffy affyPLM affyio GO Survival multtest affy
16.5 years ago Boel Brynedal ▴ 200
0
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0
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1.3k
views
FIRST ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray Annotation Normalization GO Visualization Classification Clustering Survival GO
16.5 years ago Ana Conesa ▴ 340
0
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1
reply
1.0k
views
combining data from two R arrays
GO Survival annotate genefilter vsn tilingArray GO Survival annotate genefilter vsn
16.6 years ago Richard Harrison ▴ 70
0
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4
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1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
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2
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1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.6 years ago by ▴ 40 • written 16.6 years ago by ▴ 110
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2
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1.1k
views
vsm2
Survival geneplotter affy vsn limma affyio Survival geneplotter affy vsn limma affyio
updated 16.7 years ago by ★ 13k • written 16.7 years ago by ▴ 70
0
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0
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1.1k
views
code for technical replicates in Limma with affy
Survival cdf annotate affy limma gcrma matchprobes affyio Survival cdf annotate affy
16.7 years ago Richard Friedman ★ 2.0k
0
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2
replies
1.3k
views
problem with probes2tableBM
Annotation GO Survival hgu133a2 annotate genefilter affy graph gcrma matchprobes GOstats
updated 16.7 years ago by ▴ 500 • written 16.7 years ago by ▴ 510
0
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0
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974
views
problem with function to interrogate x:Map (exonmap)
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
16.7 years ago Wolfgang Raffelsberger ▴ 160
0
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7
replies
1.7k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ★ 2.2k
0
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4
replies
1.3k
views
problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 16.7 years ago by 66k • written 16.7 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Exonmap mapping problems
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
updated 16.7 years ago by ▴ 120 • written 16.7 years ago by ▴ 10
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Thank you so much!
Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue by shepherl 3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Votes
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
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