Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
TCGABiolinks
•
reset
4
votes
8
replies
1.2k
views
TCGAbiolinks cannot find bcr_patient_barcode
TCGAbiolinks
11 months ago • updated 10 months ago
Habil Zare
▴ 200
1
vote
0
replies
170
views
Rnaseq sample barcode does not match barcode from TCGA Methylation data
TCGAMethylation450k
MethylationArray
TCGAbiolinks
Tcga
TCGAbiolinksGUI.data
9 weeks ago
BioinfoMug
• 0
1
vote
3
replies
3.1k
views
maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error
maftools
tcgabiolinks
updated 6 weeks ago by
snijesh
▴ 20 • written 6.6 years ago by
Ramiro Magno
▴ 100
0
votes
0
replies
165
views
GDC slides download
TCGAbiolinks
10 weeks ago
jain72744
• 0
0
votes
4
replies
292
views
I need to calculate the survival rate of TCGA databases
TCGAbiolinks
Survival
updated 11 weeks ago by
Lluís Revilla Sancho
▴ 730 • written 11 weeks ago by
tirordep
• 0
0
votes
1
reply
226
views
TCGA clinical data: Multiple measure of response columns in merged clinical xml file.
TCGAbiolinks
TCGA
clinical
TCGA-BRCA
written 7 weeks ago by
BioinfoMug
• 0
0
votes
1
reply
398
views
Problems when running GDC_prepare in R
TCGAbiolinks
error
GDC_prepare
6 months ago
leon
• 0
0
votes
1
reply
619
views
How to identify the batch informations from the sample ID?
TCGAbiolinks
BatchQC
BatchEffect
updated 8 months ago by
wrab425
• 0 • written 14 months ago by
snijesh
▴ 20
0
votes
0
replies
249
views
Where/how are TCGAbiolinks colData column names sourced from?
clinical
TCGAbiolinks
9 months ago
BioInfoBeginnerrr
• 0
0
votes
0
replies
146
views
TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray
normalize450K
TCGAbiolinks
Normalization
MethylationArrayData
8 weeks ago • updated 6 weeks ago
Giovanni Calice
▴ 160
0
votes
0
replies
152
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks
ChAMP
3 months ago
Thalita
• 0
0
votes
4
replies
994
views
GDCdownload Directory Problem :(
TCGAWorkflowData
TCGAbiolinks
updated 10 weeks ago by
Marcel Ramos
690 • written 2.0 years ago by
Emre
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Awards
• All
Popular Question
to
rohitsatyam102
▴ 20
Popular Question
to
shepherl
3.8k
Popular Question
to
siajunren
• 0
Scholar
to
Rory Stark
★ 5.2k
Popular Question
to
tangming2005
▴ 190
Locations
• All
United States,
just now
United States,
just now
Spain,
3 minutes ago
Argentina,
5 minutes ago
France,
5 minutes ago
Traffic: 885 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6