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write a for loop for searching TF with TFBSTools
TFBSTools R forloop
updated 3.1 years ago by • 0 • written 3.1 years ago by • 0
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779
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Read the first sequence from fasta file - TFBSTool
TFBSTools FASTA RStudio
3.1 years ago HELEN • 0
0
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995
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TFBSTools and readFASTA
TFBSTools DNASeqData readFASTA DNA RStudio
updated 3.2 years ago by 67k • written 3.2 years ago by • 0
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1.1k
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Error in TFBSTools at SitesetList
error TFBSTools R
3.2 years ago HELEN • 0
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770
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TFBSTools- analysis for trascriprion factors
TFBSTools RStudio R
3.2 years ago HELEN • 0
2
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2.6k
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Error: unable to find an inherited method for function searchSeq for signature matrix
pwm tfbstools jaspar
updated 7.3 years ago by ▴ 20 • written 7.3 years ago by ▴ 50
1
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2.2k
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TFBSTools: Appending objects to PFMatrixList
TFBSTools looping PFMatrixList PFMatrix bioconductor
7.6 years ago nathan.lawlor03 • 0
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Errore: subscript contains NAs - when running searchPairBSgenome in TFBTools
bioconductor tfbstools
updated 8.2 years ago by ▴ 20 • written 8.2 years ago by • 0
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1
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1.5k
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TFBSTools access to JASPAR2014 via getMatrixSet()
tfbstools jaspar
updated 9.2 years ago by ▴ 20 • written 9.2 years ago by • 0
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1
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1.5k
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TFBSTools pvalues function hangs on certain inputs
tfbstools
updated 9.6 years ago by ▴ 20 • written 9.8 years ago by • 0
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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