Bioconductor TxDB.Hsapiens.UCSC.hg38.knownGene

Showing : TxDB.Hsapiens.UCSC.hg38.knownGene • reset

votes

replies

2.0k

views

MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

20 months ago davidhillis • 0

votes

replies

913

views

microRNA TxDb.Hsapiens.UCSC.hg38.knownGene

23 months ago Lluís Revilla Sancho ▴ 760

votes

4.5k

views

install TxDb.Hsapiens.UCSC.hg38.knownGene

2.7 years ago Theresa ▴ 20

votes

replies

1.6k

views

TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.0 years ago by Hervé Pagès 16k • written 3.0 years ago by BioEpi • 0

votes

2.1k

views

TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.8 years ago by James W. MacDonald 67k • written 3.8 years ago by lukijanczukpawel • 0

votes

replies

1.2k

views

annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.8 years ago by kayla.interdonato ▴ 160 • written 4.8 years ago by jam526 • 0

votes

replies

1.2k

views

TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.9 years ago by shepherl 4.1k • written 4.9 years ago by bernatgel ▴ 150

votes

970

views

HLA TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.9 years ago by kayla.interdonato ▴ 160 • written 4.9 years ago by Kamil Slowikowski ▴ 30

votes

replies

3.3k

views

TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene

updated 5.1 years ago by James W. MacDonald 67k • written 5.1 years ago by Aditya ▴ 160

votes

replies

2.4k

views

TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

5.6 years ago Ruichao.Zeng ▴ 20

vote

replies

3.3k

views

txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db

updated 7.0 years ago by Simon Anders ★ 3.8k • written 7.0 years ago by Mark Dunning ★ 1.1k

vote

replies

1.6k

views

s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene

7.2 years ago Leonardo Collado Torres ★ 1.1k

votes

replies

2.9k

views

annotation txdb.hsapiens.ucsc.hg38.knowngene bug

8.1 years ago shilin.zhao ▴ 40

votes

replies

3.8k

views

txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation

8.6 years ago enricoferrero ▴ 660

14 results • Page 1 of 1

Recent ...

Replies

Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

Votes

Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Awards • All

Popular Question to Ou, Jianhong ★ 1.3k