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Showing :
UCSCtrack
•
reset
3
votes
5
replies
1.7k
views
UcscTrack and BED without headers
gviz
BED
Ucsc
UcscTrack
8.3 years ago
Andy91
▴ 60
1
vote
4
replies
2.6k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc
ucsctrack
ggbio
Gviz
hg19
updated 7.2 years ago by
maximilianh
▴ 10 • written 7.2 years ago by
metamaden
▴ 10
2
votes
4
replies
2.7k
views
Error using Gviz and BiomartGeneRegionTrack, version problem?
Gviz-package
biomart
plottracks
ucsctrack
stickleback
updated 7.1 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.2 years ago by
br
• 0
1
vote
4
replies
4.2k
views
How to display gene symbols in UCSC Track in Gviz
gviz
ucsctrack
hgnc
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
Greg G.
• 0
0
votes
2
replies
1.2k
views
How to get UCSC url when use rtracklayer, contain the track in the url ,it may be very useful
rtracklayer
UCSC
ucsctrack
updated 6.4 years ago by
James W. MacDonald
65k • written 6.4 years ago by
zhangqshxxzz
• 0
2
votes
2
replies
1.2k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz
protein
visualization
UcscTrack
protein domains
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
paul.jaschke
▴ 10
1
vote
1
reply
990
views
Gviz: UcscTrack() getting error when there is no genes in the region
givz
UcscTrack
7.7 years ago
shuoguo
▴ 10
0
votes
0
replies
915
views
Gviz: Is it possible to plot coding (thick boxes) and non-coding (thin boxes) regions for an UcscTrack?
Gviz
gene names
thinBoxFeature
UCSCtrack
7.7 years ago
angela.heck
• 0
0
votes
0
replies
1.1k
views
gviz UcscTrack label with HGNC gene symbol
gviz
ucsctrack
genesymbols
7.5 years ago
dmb107
• 0
9 results • Page
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Recent ...
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Comment: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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Rory Stark
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tangming2005
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