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Showing :
UcscTrack
•
reset
3
votes
5
replies
2.3k
views
UcscTrack and BED without headers
gviz
BED
Ucsc
UcscTrack
10.1 years ago
Andy91
▴ 60
2
votes
4
replies
3.8k
views
Error using Gviz and BiomartGeneRegionTrack, version problem?
Gviz-package
biomart
plottracks
ucsctrack
stickleback
updated 9.0 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.0 years ago by
br
• 0
1
vote
4
replies
3.9k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc
ucsctrack
ggbio
Gviz
hg19
updated 9.0 years ago by
maximilianh
▴ 10 • written 9.0 years ago by
metamaden
▴ 10
2
votes
2
replies
2.0k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz
protein
visualization
UcscTrack
protein domains
updated 5.5 years ago by
James W. MacDonald
68k • written 5.5 years ago by
paul.jaschke
▴ 10
1
vote
1
reply
1.4k
views
Gviz: UcscTrack() getting error when there is no genes in the region
givz
UcscTrack
9.5 years ago
shuoguo
▴ 10
1
vote
4
replies
5.3k
views
How to display gene symbols in UCSC Track in Gviz
gviz
ucsctrack
hgnc
updated 8.8 years ago by
James W. MacDonald
68k • written 8.8 years ago by
Greg G.
• 0
0
votes
0
replies
1.3k
views
Gviz: Is it possible to plot coding (thick boxes) and non-coding (thin boxes) regions for an UcscTrack?
Gviz
gene names
thinBoxFeature
UCSCtrack
9.6 years ago
angela.heck
• 0
0
votes
2
replies
1.7k
views
How to get UCSC url when use rtracklayer, contain the track in the url ,it may be very useful
rtracklayer
UCSC
ucsctrack
updated 8.2 years ago by
James W. MacDonald
68k • written 8.2 years ago by
zhangqshxxzz
• 0
0
votes
0
replies
1.5k
views
gviz UcscTrack label with HGNC gene symbol
gviz
ucsctrack
genesymbols
9.3 years ago
dmb107
• 0
9 results • Page
1 of 1
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Replies
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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