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Uniprot
•
reset
2
votes
5
replies
6.0k
views
UniprotKB AC/ID to Entrez ID Conversion
ID
Uniprot
EntrezID
3.7 years ago
tom.kloter
• 0
3
votes
11
replies
8.0k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler
AnnotationHub
GO
uniprot
updated 23 months ago by
Guido Hooiveld
★ 4.1k • written 5.0 years ago by
Alberto
• 0
1
vote
1
reply
1.8k
views
UniProt.ws - Speeding up select() for data retrieval
UniProt.ws
UniProt
updated 5.1 years ago by
James W. MacDonald
68k • written 5.1 years ago by
JavierM
• 0
2
votes
3
replies
1.7k
views
Uniprot and UniProt.ws
Uniprot
Annotation
Identifiers
6.7 years ago
Juliet Hannah
▴ 360
4
votes
2
replies
1.3k
views
drawProteins from Uniprot entry (missing chain information)
drawProteins
uniprot
updated 7.0 years ago by
James W. MacDonald
68k • written 7.0 years ago by
mblango
• 0
1
vote
4
replies
1.9k
views
UniProt.ws non-functional or abandoned?
uniprot.ws
uniprot
uniprot accessions
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
balin
• 0
0
votes
2
replies
1.6k
views
Error retrieving data with biomaRt
biomart
r
getbm
uniprot
7.9 years ago
lluex.rova
• 0
0
votes
1
reply
1.7k
views
UniProt.ws - single database for two species
uniprot.ws
uniprot
updated 8.2 years ago by
James W. MacDonald
68k • written 8.2 years ago by
l.nilse
• 0
0
votes
1
reply
2.4k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 8.3 years ago by
Mike Smith
★ 6.6k • written 8.3 years ago by
julie.chevalier
• 0
1
vote
7
replies
2.8k
views
UniProt.ws report 1:many mappings in a single row
uniprot.ws
UniProt
annotation
9.2 years ago • updated 9.1 years ago
l.nilse
• 0
0
votes
3
replies
1.6k
views
Accessing feature data of a Malus domestica Nimblegen microarray
nimblegen
Biomart
Uniprot
updated 9.1 years ago by
Gordon Smyth
53k • written 9.1 years ago by
theobroma22
▴ 10
4
votes
1
reply
2.2k
views
Converting Protein Accessions Into Protein Symbols
uniprot
uniprot.ws
9.9 years ago
Dario Strbenac
★ 1.6k
2
votes
4
replies
4.0k
views
UniProt.ws version 2.10.2
uniprot.ws
subcellular location
uniprot
9.9 years ago
DHS
• 0
0
votes
3
replies
1.9k
views
Anotations Score of uniprot. ws
uniprot.ws
uniprot
updated 10.1 years ago by
James W. MacDonald
68k • written 10.1 years ago by
cerikahp
• 0
2
votes
2
replies
1.8k
views
Is there a package that has Uniprot protein descriptions?
uniprot.ws
uniprot
uniprot accessions
software error
updated 10.1 years ago by
James W. MacDonald
68k • written 10.1 years ago by
john
▴ 10
2
votes
14
replies
4.8k
views
Unimart not available in 2015?
biomart
uniprot
unimart
10.2 years ago
john
▴ 10
1
vote
4
replies
5.5k
views
problem with retrieving UniProt annotation data
uniprot.ws
uniprot
updated 10.9 years ago by
Marc Carlson
★ 7.2k • written 10.9 years ago by
Guido Hooiveld
★ 4.1k
0
votes
6
replies
3.1k
views
converting UniProt to SGD ids using UniProt.wd
uniprot.ws
uniprot
ensembl
updated 11.0 years ago by
Marc Carlson
★ 7.2k • written 11.0 years ago by
Joseph Barry
▴ 160
0
votes
2
replies
2.1k
views
Missing ensembl_ids in biomaRt uniprot query
biomaRt
uniprot
ensembl
updated 11.1 years ago by
me
• 0 • written 11.1 years ago by
António Miguel de Jesus Domingues
▴ 510
19 results • Page
1 of 1
Recent ...
Replies
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
I updated the above answer today.
Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
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