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Uniprot
•
reset
2
votes
5
replies
4.7k
views
UniprotKB AC/ID to Entrez ID Conversion
ID
Uniprot
EntrezID
2.7 years ago
tom.kloter
• 0
3
votes
11
replies
6.4k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler
AnnotationHub
GO
uniprot
updated 12 months ago by
Guido Hooiveld
★ 4.1k • written 4.0 years ago by
Alberto
• 0
1
vote
1
reply
1.3k
views
UniProt.ws - Speeding up select() for data retrieval
UniProt.ws
UniProt
updated 4.2 years ago by
James W. MacDonald
68k • written 4.2 years ago by
JavierM
• 0
2
votes
3
replies
1.3k
views
Uniprot and UniProt.ws
Uniprot
Annotation
Identifiers
5.8 years ago
Juliet Hannah
▴ 360
4
votes
2
replies
1.1k
views
drawProteins from Uniprot entry (missing chain information)
drawProteins
uniprot
updated 6.1 years ago by
James W. MacDonald
68k • written 6.1 years ago by
mblango
• 0
1
vote
4
replies
1.5k
views
UniProt.ws non-functional or abandoned?
uniprot.ws
uniprot
uniprot accessions
updated 6.3 years ago by
James W. MacDonald
68k • written 6.3 years ago by
balin
• 0
0
votes
2
replies
1.3k
views
Error retrieving data with biomaRt
biomart
r
getbm
uniprot
7.0 years ago
lluex.rova
• 0
0
votes
1
reply
1.4k
views
UniProt.ws - single database for two species
uniprot.ws
uniprot
updated 7.3 years ago by
James W. MacDonald
68k • written 7.3 years ago by
l.nilse
• 0
0
votes
1
reply
2.0k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 7.4 years ago by
Mike Smith
★ 6.6k • written 7.4 years ago by
julie.chevalier
• 0
1
vote
7
replies
2.4k
views
UniProt.ws report 1:many mappings in a single row
uniprot.ws
UniProt
annotation
8.3 years ago • updated 8.2 years ago
l.nilse
• 0
0
votes
3
replies
1.3k
views
Accessing feature data of a Malus domestica Nimblegen microarray
nimblegen
Biomart
Uniprot
updated 8.2 years ago by
Gordon Smyth
52k • written 8.2 years ago by
theobroma22
▴ 10
4
votes
1
reply
1.9k
views
Converting Protein Accessions Into Protein Symbols
uniprot
uniprot.ws
9.0 years ago
Dario Strbenac
★ 1.6k
2
votes
4
replies
3.3k
views
UniProt.ws version 2.10.2
uniprot.ws
subcellular location
uniprot
9.0 years ago
DHS
• 0
0
votes
3
replies
1.6k
views
Anotations Score of uniprot. ws
uniprot.ws
uniprot
updated 9.2 years ago by
James W. MacDonald
68k • written 9.2 years ago by
cerikahp
• 0
2
votes
2
replies
1.5k
views
Is there a package that has Uniprot protein descriptions?
uniprot.ws
uniprot
uniprot accessions
software error
updated 9.2 years ago by
James W. MacDonald
68k • written 9.2 years ago by
john
▴ 10
2
votes
14
replies
4.3k
views
Unimart not available in 2015?
biomart
uniprot
unimart
9.2 years ago
john
▴ 10
1
vote
4
replies
4.3k
views
problem with retrieving UniProt annotation data
uniprot.ws
uniprot
updated 10.0 years ago by
Marc Carlson
★ 7.2k • written 10.0 years ago by
Guido Hooiveld
★ 4.1k
0
votes
6
replies
2.7k
views
converting UniProt to SGD ids using UniProt.wd
uniprot.ws
uniprot
ensembl
updated 10.1 years ago by
Marc Carlson
★ 7.2k • written 10.1 years ago by
Joseph Barry
▴ 160
0
votes
2
replies
1.7k
views
Missing ensembl_ids in biomaRt uniprot query
biomaRt
uniprot
ensembl
updated 10.2 years ago by
me
• 0 • written 10.2 years ago by
António Miguel de Jesus Domingues
▴ 510
19 results • Page
1 of 1
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Replies
Answer: SingleR with multiple single cell references
by
Aaron Lun
★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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