Bioconductor Uniprot

Showing : Uniprot • reset

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4.8k

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ID Uniprot EntrezID

2.8 years ago tom.kloter • 0

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6.6k

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clusterProfiler AnnotationHub GO uniprot

updated 13 months ago by Guido Hooiveld ★ 4.1k • written 4.1 years ago by Alberto • 0

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1.4k

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UniProt.ws UniProt

updated 4.3 years ago by James W. MacDonald 68k • written 4.3 years ago by JavierM • 0

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1.3k

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Uniprot Annotation Identifiers

5.9 years ago Juliet Hannah ▴ 360

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1.1k

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drawProteins uniprot

updated 6.1 years ago by James W. MacDonald 68k • written 6.1 years ago by mblango • 0

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1.5k

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uniprot.ws uniprot uniprot accessions

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by balin • 0

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1.4k

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biomart r getbm uniprot

7.1 years ago lluex.rova • 0

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1.4k

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uniprot.ws uniprot

updated 7.4 years ago by James W. MacDonald 68k • written 7.4 years ago by l.nilse • 0

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2.0k

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Annotation mouse UNIPROT

updated 7.5 years ago by Mike Smith ★ 6.6k • written 7.5 years ago by julie.chevalier • 0

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2.4k

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uniprot.ws UniProt annotation

8.3 years ago l.nilse • 0

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1.4k

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nimblegen Biomart Uniprot

updated 8.3 years ago by Gordon Smyth 52k • written 8.3 years ago by theobroma22 ▴ 10

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2.0k

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uniprot uniprot.ws

9.0 years ago Dario Strbenac ★ 1.6k

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3.3k

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uniprot.ws subcellular location uniprot

9.1 years ago DHS • 0

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uniprot.ws uniprot

updated 9.3 years ago by James W. MacDonald 68k • written 9.3 years ago by cerikahp • 0

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1.6k

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uniprot.ws uniprot uniprot accessions software error

updated 9.3 years ago by James W. MacDonald 68k • written 9.3 years ago by john ▴ 10

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4.4k

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biomart uniprot unimart

9.3 years ago john ▴ 10

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4.4k

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uniprot.ws uniprot

updated 10.0 years ago by Marc Carlson ★ 7.2k • written 10.0 years ago by Guido Hooiveld ★ 4.1k

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2.7k

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uniprot.ws uniprot ensembl

updated 10.2 years ago by Marc Carlson ★ 7.2k • written 10.2 years ago by Joseph Barry ▴ 160

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1.7k

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biomaRt uniprot ensembl

updated 10.3 years ago by me • 0 • written 10.3 years ago by António Miguel de Jesus Domingues ▴ 510

19 results • Page 1 of 1

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Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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