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Showing :
Volcanoplot
•
reset
11
votes
3
replies
9.1k
views
Volcanoplot with limma - RAW P-values or Adj.P-Values
volcanoplot
limma
fdr
6.8 years ago • updated 3.5 years ago
tcalvo
▴ 90
7
votes
4
replies
5.7k
views
Gene symbols on MA-plot
limma
plot.MA
volcanoplot
oligo
updated 8.9 years ago by
Gordon Smyth
50k • written 8.9 years ago by
Gabriel Nathan Kaufman, Mr
▴ 60
5
votes
4
replies
6.8k
views
Volcano plot labeling troubles
limma
volcanoplot
updated 6.8 years ago by
Gordon Smyth
50k • written 9.5 years ago by
mccallionc403
• 0
3
votes
5
replies
2.1k
views
Volcano plot - select additional gene
EnhancedVolcano
RNASeqR
R
volcanoplot
updated 3.5 years ago by
Kevin Blighe
★ 3.9k • written 3.5 years ago by
camillab.
▴ 10
2
votes
4
replies
7.3k
views
Volcano Plot (highlighting top genes in a different color)
volcanoplot
updated 6.5 years ago by
thokall
▴ 160 • written 6.5 years ago by
Nithisha
▴ 10
2
votes
2
replies
3.1k
views
cummeRbund change point size in volcano plot
cummerbund
ggplot2
size
r
volcanoplot
updated 9.4 years ago by
James W. MacDonald
65k • written 9.4 years ago by
ianmisner17
▴ 20
1
vote
5
replies
2.4k
views
Why the p value and logFC calculated by limma is so small
limma
volcanoplot
pvalue
logFC
updated 5.2 years ago by
Gordon Smyth
50k • written 5.2 years ago by
xingxd16
▴ 20
0
votes
2
replies
1.7k
views
Draw volcano plot by modifying contrast matrix (lumi package)
volcanoplot
design and contrast matrix
updated 6.6 years ago by
Gordon Smyth
50k • written 6.6 years ago by
marongiu.luigi
• 0
0
votes
4
replies
6.9k
views
Limma Volcano Plot Highlight Top Genes by Color
limma
microarray
volcanoplot
color
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
dmm204
• 0
0
votes
2
replies
1.2k
views
volcano plot in Limma
limma
volcanoplot
updated 8.0 years ago by
Aaron Lun
★ 28k • written 8.0 years ago by
mheydarpour
▴ 10
0
votes
1
reply
780
views
part of the volcano plot does not appear.
plot
volcano
volcanoplot
updated 14 months ago by
Basti
▴ 780 • written 14 months ago by
Sooni
▴ 10
0
votes
4
replies
1.3k
views
Volcano plot becomes flipped when I add a third condition
DESeq2
volcanoplot
deseq
HELP
contrast
updated 14 months ago by
Basti
▴ 780 • written 14 months ago by
Michael
• 0
0
votes
1
reply
1.0k
views
Pseudo-coloring DiffBind volcano plot
diffbind
chipseq
volcanoplot
ggplot2
updated 6.6 years ago by
Rory Stark
★ 5.2k • written 6.6 years ago by
rbronste
▴ 60
0
votes
1
reply
583
views
Assigning the name of top 100 DE transcripts/genes to Volcano plot
limma
DEGreport
Volcanoplot
updated 16 months ago by
Gordon Smyth
50k • written 16 months ago by
Mohammad
• 0
14 results • Page
1 of 1
Recent ...
Replies
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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