Bioconductor Xvector

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IRanges XVector AtomicList

written 3.4 years ago by Pierre-Luc Germain ▴ 20

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5.5k

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XVector docker Install

4.0 years ago • updated 3.9 years ago RobKo ▴ 10

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1.0k

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XVector

updated 4.7 years ago by Martin Morgan 25k • written 4.7 years ago by robmaz77 ▴ 20

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2.8k

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S4Vectors IRanges XVector GenomicRanges scran

updated 6.8 years ago by Aaron Lun ★ 29k • written 6.8 years ago by Momo • 0

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3.0k

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bioconductor iranges s4vectors xvector r 3.3.2

updated 7.3 years ago by becker.gabriel ▴ 10 • written 7.3 years ago by chokoiboko • 0

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1.7k

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variantannotation xvector iranges

7.4 years ago Vivek.b ▴ 100

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5.6k

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subseq Xvector dnastringset

updated 8.4 years ago by Hervé Pagès 16k • written 8.5 years ago by Sophie • 0

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1.1k

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xvector

8.5 years ago Charles Plessy ▴ 180

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2.8k

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software error gcrma Xvector iranges

9.2 years ago gary_smith • 0

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1.4k

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Network Cancer IRanges XVector

11.1 years ago Hervé Pagès 16k

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1.6k

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Cancer XVector

11.1 years ago Hervé Pagès 16k

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2.7k

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IRanges GenomicRanges VariantTools XVector IRanges GenomicRanges VariantTools XVector

updated 12.0 years ago by Michael Lawrence ★ 11k • written 12.0 years ago by heyi xiao ▴ 360

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XVector XVector

updated 12.3 years ago by Hervé Pagès 16k • written 12.3 years ago by Pengcheng Yang ▴ 60

13 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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