Bioconductor Xvector

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IRanges XVector AtomicList

written 2.5 years ago by Pierre-Luc Germain ▴ 20

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XVector docker Install

3.1 years ago RobKo ▴ 10

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851

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XVector

updated 3.8 years ago by Martin Morgan 25k • written 3.8 years ago by robmaz77 ▴ 20

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S4Vectors IRanges XVector GenomicRanges scran

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by Momo • 0

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bioconductor iranges s4vectors xvector r 3.3.2

updated 6.4 years ago by becker.gabriel ▴ 10 • written 6.4 years ago by chokoiboko • 0

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1.4k

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variantannotation xvector iranges

6.6 years ago Vivek.b ▴ 100

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subseq Xvector dnastringset

updated 7.6 years ago by Hervé Pagès 16k • written 7.6 years ago by Sophie • 0

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970

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xvector

7.7 years ago Charles Plessy ▴ 180

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2.4k

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software error gcrma Xvector iranges

8.4 years ago • updated 8.3 years ago gary_smith • 0

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Network Cancer IRanges XVector

10.3 years ago Hervé Pagès 16k

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1.4k

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Cancer XVector

10.3 years ago Hervé Pagès 16k

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IRanges GenomicRanges VariantTools XVector IRanges GenomicRanges VariantTools XVector

updated 11.1 years ago by Michael Lawrence ★ 11k • written 11.1 years ago by heyi xiao ▴ 360

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XVector XVector

updated 11.4 years ago by Hervé Pagès 16k • written 11.4 years ago by Pengcheng Yang ▴ 60

13 results • Page 1 of 1

Recent ...

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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