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oligoClasses
•
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0
votes
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232
views
Custom CDF creation for HTA 2.0 array using GTF annotation
oligo
oligoClasses
pdInfoBuilder
affycoretools
affyio
19 days ago • updated 18 days ago
Seymoo
• 0
0
votes
3
replies
2.2k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
written 4.2 years ago by
tanya
• 0
2
votes
8
replies
1.6k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses
oligo
pdInfoBuilder
3.8 years ago • updated 3.7 years ago
efoss
▴ 10
2
votes
6
replies
4.4k
views
Can't install package oligoClasses
R
oligoClasses
ff
updated 4.6 years ago by
Kevin Blighe
★ 4.0k • written 4.6 years ago by
salamandra
▴ 20
2
votes
2
replies
2.4k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges
oligoclasses
BiocGenerics
6.9 years ago
GENOMIC_region
• 0
0
votes
7
replies
2.2k
views
oligo and GenericPDInfo
affy
oligoclasses
oligo package
pdinfobuilder
annotationdbi
updated 7.8 years ago by
James W. MacDonald
68k • written 7.8 years ago by
Aedin Culhane
▴ 510
2
votes
1
reply
1.5k
views
Output of ArrayExpress() function
oligo
oligoclasses
arrayexpress
updated 8.2 years ago by
James W. MacDonald
68k • written 8.2 years ago by
ste0891
• 0
2
votes
4
replies
1.7k
views
getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo
oligoclasses
affy
updated 8.5 years ago by
James W. MacDonald
68k • written 8.5 years ago by
mark.aaron.fisher
• 0
0
votes
2
replies
2.8k
views
Cannot install Oligo package
oligo
oligoclasses
8.7 years ago
Anna Dvorkin
▴ 40
0
votes
2
replies
2.1k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews
Annotation
Organism
biocViews
oligo
oligoClasses
BiocViews
BiocViews
Annotation
updated 10.0 years ago by
Jason Hubbard
▴ 20 • written 11.3 years ago by
Guilherme Rocha
▴ 40
0
votes
0
replies
1.7k
views
Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo
oligoClasses
oligo
oligoClasses
11.3 years ago
Peter Crisp
▴ 10
0
votes
1
reply
1.7k
views
limma2annaffy
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
updated 11.3 years ago by
James W. MacDonald
68k • written 11.3 years ago by
Guest User
★ 13k
0
votes
8
replies
2.5k
views
vsn preprocess with oligo package
vsn
oligo
oligoClasses
vsn
oligo
oligoClasses
updated 12.3 years ago by
James W. MacDonald
68k • written 12.3 years ago by
José LÓPEZ
▴ 110
0
votes
4
replies
3.0k
views
Problems with 'affxparser' package
oligoClasses
oligoClasses
12.3 years ago
Valor Becerra, Luis Miguel
▴ 30
3
votes
4
replies
2.0k
views
cause 'memory not mapped' when use oligo
oligo
oligoClasses
oligo
oligoClasses
updated 12.6 years ago by
Benilton Carvalho
▴ 50 • written 12.6 years ago by
Ou, Jianhong
★ 1.3k
0
votes
4
replies
3.3k
views
Error : package slot missing from signature for generic
Biobase
lumi
oligoClasses
Biobase
lumi
oligoClasses
12.8 years ago • updated 12.7 years ago
Mark Cowley
▴ 910
0
votes
2
replies
1.6k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation
oligo
pdInfoBuilder
oligoClasses
Annotation
oligo
pdInfoBuilder
oligoClasses
updated 13.1 years ago by
Benilton Carvalho
★ 4.3k • written 13.1 years ago by
Groot, Philip de
▴ 630
0
votes
0
replies
1.5k
views
Question about using oligo and SNPchip for copy number analysis
SNP
Cancer
graph
oligo
SNPchip
oligoClasses
VanillaICE
crlmm
SNP
Cancer
graph
oligo
16.0 years ago
Min-Han Tan
▴ 40
0
votes
1
reply
1.1k
views
Bioconductor Digest, Vol 68, Issue 7
oligo
pdInfoBuilder
oligoClasses
oligo
pdInfoBuilder
oligoClasses
written 16.6 years ago by
Matt Settles
▴ 70
19 results • Page
1 of 1
Recent ...
Replies
Answer: Design formula for circadian time-course data for vst() function
by
ATpoint
★ 4.8k
This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
Comment: Module membership vs gene significance result and Modules-trait relationships re
by
Vinaya
• 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts
by
Tom
• 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
I am going to try this right now, thanks !
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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