Showing : oligoClasses • reset
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Custom CDF creation for HTA 2.0 array using GTF annotation
oligo oligoClasses pdInfoBuilder affycoretools affyio
19 days ago • updated 18 days ago Seymoo • 0
0
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3
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2.2k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 4.2 years ago by • 0
2
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8
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1.6k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
3.8 years ago • updated 3.7 years ago efoss ▴ 10
2
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6
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4.4k
views
Can't install package oligoClasses
R oligoClasses ff
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by ▴ 20
2
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2
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2.4k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
6.9 years ago GENOMIC_region • 0
0
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7
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2.2k
views
oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 7.8 years ago by 68k • written 7.8 years ago by ▴ 510
2
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1
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1.5k
views
Output of ArrayExpress() function
oligo oligoclasses arrayexpress
updated 8.2 years ago by 68k • written 8.2 years ago by • 0
2
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4
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1.7k
views
getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo oligoclasses affy
updated 8.5 years ago by 68k • written 8.5 years ago by • 0
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2.8k
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Cannot install Oligo package
oligo oligoclasses
8.7 years ago Anna Dvorkin ▴ 40
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2
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2.1k
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pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 10.0 years ago by ▴ 20 • written 11.3 years ago by ▴ 40
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0
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1.7k
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Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo oligoClasses oligo oligoClasses
11.3 years ago Peter Crisp ▴ 10
0
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1
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1.7k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 11.3 years ago by 68k • written 11.3 years ago by ★ 13k
0
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8
replies
2.5k
views
vsn preprocess with oligo package
vsn oligo oligoClasses vsn oligo oligoClasses
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 110
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4
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3.0k
views
Problems with 'affxparser' package
oligoClasses oligoClasses
12.3 years ago Valor Becerra, Luis Miguel ▴ 30
3
votes
4
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2.0k
views
cause 'memory not mapped' when use oligo
oligo oligoClasses oligo oligoClasses
updated 12.6 years ago by ▴ 50 • written 12.6 years ago by ★ 1.3k
0
votes
4
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3.3k
views
Error : package slot missing from signature for generic
Biobase lumi oligoClasses Biobase lumi oligoClasses
12.8 years ago • updated 12.7 years ago Mark Cowley ▴ 910
0
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2
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1.6k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 13.1 years ago by ★ 4.3k • written 13.1 years ago by ▴ 630
0
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0
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1.5k
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
16.0 years ago Min-Han Tan ▴ 40
0
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1
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1.1k
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Bioconductor Digest, Vol 68, Issue 7
oligo pdInfoBuilder oligoClasses oligo pdInfoBuilder oligoClasses
written 16.6 years ago by ▴ 70
19 results • Page 1 of 1
Recent ...
Replies
Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k
This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…
Comment: Filtering after DESeq by caroline.zanchi • 0
... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq by caroline.zanchi • 0
I am going to try this right now, thanks !
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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