Showing : pdInfoBuilder • reset
2
votes
8
replies
953
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
2.4 years ago • updated 2.3 years ago efoss ▴ 10
2
votes
3
replies
926
views
Annotation package generation for HTA-2_0 by pdInfoBuilder fails
microarray pdInfoBuilder oligo
updated 3.4 years ago by 64k • written 3.4 years ago by • 0
6
votes
4
replies
2.4k
views
Affymetrix miRNA4.1 / oligo package / pd.mirna.4.1
microarray mirna oligo package pdinfobuilder pd.mirna
updated 4.0 years ago by ▴ 10 • written 6.5 years ago by ▴ 20
0
votes
7
replies
1.5k
views
oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 6.4 years ago by 64k • written 6.4 years ago by ▴ 510
1
vote
3
replies
2.8k
views
How to analyse clariom d human files
limma pdinfobuilder affy cdf
6.7 years ago yusuf.khan ▴ 10
3
votes
7
replies
1.5k
views
Oligo: cannot fit robust Probe Level linear Models / fitPLM when using a custom CDF
oligo pdinfobuilder pd.mogene.1.1.st customcdf
updated 7.2 years ago by 64k • written 7.7 years ago by ★ 3.8k
1
vote
5
replies
2.2k
views
Affymetrix Rat Transcriptome Array (Clariom D) annotation
annotation microarray pdinfobuilder oligo
7.2 years ago Ed D • 0
0
votes
3
replies
2.6k
views
Draft support for HTA 2.0 with oligo
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 7.4 years ago by ▴ 10 • written 9.8 years ago by ▴ 10
1
vote
0
replies
2.2k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo pdInfoBuilder pd.hta.2.0
8.4 years ago tangboyun ▴ 30
0
votes
2
replies
1.2k
views
Error with annotation package with pdInfoBuilder for NimbleGen arrays
pdinfobuilder oligo
updated 8.5 years ago by 64k • written 8.5 years ago by • 0
0
votes
5
replies
1.6k
views
Annotation package built with pdInfoBuilder cannot be installed
annotation pdinfobuilder
8.7 years ago alakatos ▴ 130
1
vote
3
replies
2.3k
views
Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
BiocViews Annotation Organism biocViews pdInfoBuilder BiocViews BiocViews Annotation
updated 9.3 years ago by 64k • written 9.3 years ago by ▴ 40
0
votes
1
reply
1.2k
views
pd.mirna.4.1
pdInfoBuilder pdInfoBuilder
updated 9.6 years ago by 64k • written 9.6 years ago by ★ 12k
0
votes
0
replies
1.3k
views
Draft support for HTA 2.0 with oligo
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
9.6 years ago Elena Serrano ▴ 30
0
votes
0
replies
2.0k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
9.6 years ago Elena Serrano ▴ 30
0
votes
4
replies
6.2k
views
Problem "Error: is.character(filenames) is not TRUE" in read.xysfiles (Oligo package)
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 9.6 years ago by 64k • written 9.6 years ago by ▴ 60
0
votes
3
replies
1.1k
views
pdInfoBuilder - problem installing the annotation package
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 9.7 years ago by ★ 4.3k • written 9.7 years ago by ▴ 60
0
votes
1
reply
1.6k
views
Draft support for HTA 2.0 with oligo
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 9.8 years ago by ▴ 910 • written 9.8 years ago by ★ 4.3k
0
votes
0
replies
3.3k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
9.9 years ago Elena Serrano ▴ 30
0
votes
1
reply
1.9k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
updated 10.0 years ago by ★ 4.3k • written 10.0 years ago by ▴ 290
0
votes
1
reply
1.2k
views
upload multiple genelists at a time for GO or pathway enrichment
GO cdf oligo pdInfoBuilder xps GO cdf oligo pdInfoBuilder xps
updated 10.1 years ago by ▴ 190 • written 10.1 years ago by ▴ 100
0
votes
1
reply
1.0k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 10.2 years ago by ▴ 50 • written 10.3 years ago by ★ 4.3k
0
votes
1
reply
1.1k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
10.3 years ago Nitesh Turaga ▴ 50
0
votes
1
reply
1.3k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 10.3 years ago by ★ 4.3k • written 10.3 years ago by ▴ 50
0
votes
4
replies
1.4k
views
FeatureExpressionSet using list.files() in place of read.xysfiles()
Microarray Annotation GO Organism probe annotate limma convert pdInfoBuilder sva GO sva
updated 10.5 years ago by ★ 4.3k • written 10.5 years ago by ▴ 140
0
votes
10
replies
2.8k
views
PAIR files -- feature set table
Microarray Annotation Organism annotate pdInfoBuilder Microarray Annotation Organism
updated 10.5 years ago by ★ 4.3k • written 10.5 years ago by ★ 12k
0
votes
7
replies
1.5k
views
install pdInfoBuilder package
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 11.0 years ago by ★ 4.3k • written 11.0 years ago by ▴ 40
0
votes
0
replies
755
views
Nimblegen microarray MM8_60mer_expr
Microarray Annotation oligo pdInfoBuilder Microarray Annotation oligo pdInfoBuilder
11.1 years ago Benilton Carvalho ★ 4.3k
0
votes
4
replies
1.4k
views
Passing multiple files to pdInfobuilder
BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder
updated 11.1 years ago by ▴ 50 • written 11.1 years ago by ★ 12k
0
votes
3
replies
1.8k
views
oligo and pd.aragene.1.1.st annotation
Annotation limma Category pdInfoBuilder Annotation limma Category pdInfoBuilder
updated 11.3 years ago by ★ 7.2k • written 11.3 years ago by ▴ 20
0
votes
2
replies
1.1k
views
oligo and pdInfoBuilder
Annotation Yeast oligo pdInfoBuilder Annotation Yeast oligo pdInfoBuilder
updated 11.5 years ago by 6.7k • written 11.5 years ago by ▴ 340
0
votes
0
replies
1.2k
views
Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
11.6 years ago zeynep özkeserli ▴ 160
0
votes
0
replies
1.3k
views
Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
11.6 years ago zeynep özkeserli ▴ 160
0
votes
2
replies
1.2k
views
oligo package: extracting position, sequence, and intensity from Affymetrix tiling array
BiocViews Organism biocViews oligo pdInfoBuilder BiocViews BiocViews Organism biocViews
updated 11.7 years ago by ★ 4.3k • written 11.7 years ago by ★ 12k
0
votes
2
replies
1.3k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 11.7 years ago by ★ 4.3k • written 11.7 years ago by ▴ 630
0
votes
0
replies
1.3k
views
Using pdInfoBuilder for Human Exon Array
BiocViews Annotation Organism cdf biocViews oligo pdInfoBuilder BiocViews BiocViews cdf
12.5 years ago Maria Rodrigo-Domingo / Region Nordjyll… ▴ 10
0
votes
1
reply
881
views
pdInfoBuilder
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 12.6 years ago by ★ 4.3k • written 12.6 years ago by ▴ 40
0
votes
3
replies
1.1k
views
Error using pdInfoBuilder for NimbleGen Array
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 12.8 years ago by 6.7k • written 12.8 years ago by ▴ 20
0
votes
0
replies
975
views
Need help with pdInfoBuilder package for human ST arrays
Annotation affy oligo pdInfoBuilder Annotation affy oligo pdInfoBuilder
13.4 years ago He, Yiwen NIH/CIT ▴ 360
0
votes
2
replies
919
views
pdInfoBuilder -- MOUSEDIVm520650
Annotation pdInfoBuilder crlmm Annotation pdInfoBuilder crlmm
updated 13.5 years ago by 64k • written 13.5 years ago by ▴ 100
0
votes
3
replies
1.1k
views
pdInfoBuider: how to view SQL scheme?
pdInfoBuilder pdInfoBuilder
updated 13.6 years ago by ★ 4.3k • written 13.6 years ago by ★ 3.8k
0
votes
8
replies
1.8k
views
pdInfoBuilder: invalid class object ("ScalarCharacter")
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 13.7 years ago by 6.7k • written 13.7 years ago by ★ 3.8k
0
votes
6
replies
1.5k
views
PdInfoBuilder for nimblegen array
Annotation Organism oligo pdInfoBuilder Annotation Organism oligo pdInfoBuilder
updated 13.8 years ago by ★ 4.3k • written 13.8 years ago by ▴ 40
0
votes
0
replies
730
views
TilingFeatureSet
GO pdInfoBuilder GO pdInfoBuilder
13.9 years ago Diego Martinez ▴ 10
0
votes
1
reply
1.1k
views
Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 14.1 years ago by ▴ 430 • written 14.1 years ago by ▴ 410
0
votes
2
replies
1.5k
views
Affymetrix Mouse Promoter array / pdInfoBuilder
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 14.1 years ago by ▴ 50 • written 14.1 years ago by ▴ 330
0
votes
0
replies
934
views
problem with pdInfoBuilder
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
14.5 years ago Elsa Aguera ▴ 10
0
votes
0
replies
1.0k
views
[R] Need to build package for Affy HT HG-U133+ PM arrays
Annotation GO cdf probe affy pdInfoBuilder Annotation GO cdf probe affy pdInfoBuilder
14.7 years ago James W. MacDonald 64k
0
votes
3
replies
1.4k
views
Problem with RMA using pdInfoBuilder, oligo and limma
cdf probe affy limma pdInfoBuilder cdf probe affy limma pdInfoBuilder
14.8 years ago Anne-Marie Madore ▴ 30
0
votes
2
replies
1.6k
views
Custom CDF files
Annotation GO cdf affy PROcess oligo pdInfoBuilder Annotation GO cdf affy PROcess
updated 15.0 years ago by ★ 1.1k • written 15.0 years ago by ▴ 20
50 results • Page 1 of 1
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Replies
Comment: Why is DMRcate not available for Bioconductor version 3.18? by Daniel E. Weeks ▴ 20
Thank you for the explanation and contacting the DSS package authors.
Comment: Why is DMRcate not available for Bioconductor version 3.18? by shepherl 3.6k
The DSS package authors just need to add `edgeR` to their Suggest of their DESCRIPTION. They have been contacted about it but have not acte…
Answer: GOslim missing GO term by James W. MacDonald 64k
I think it's because that GO term isn't an offspring of any term in the GO slim you are downloading. ``` > ids<- "GO:0002831" > slim <…
Answer: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k
You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…
Comment: DESeq2 - groups with biological replicates from the same patient by James W. MacDonald 64k
If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…
Votes
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: limma::voom vs edgeR::voomLmFit - when to use?
Answer: limma::voom vs edgeR::voomLmFit - when to use?
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