Showing : annaffy • reset
3
votes
1
reply
1.1k
views
Gene Ontology link in aaf.handler() not working
annaffy aafTableAnn Gene Ontology aaf.handler()
updated 5.0 years ago by 65k • written 5.0 years ago by • 0
1
vote
10
replies
2.7k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 7.0 years ago by 65k • written 7.0 years ago by • 0
0
votes
1
reply
1.7k
views
Help with GSEA package
hu6800 cdf genefilter multtest affy gcrma siggenes annaffy GSEABase hu6800 cdf multtest
updated 13.4 years ago by 25k • written 13.4 years ago by ▴ 20
0
votes
5
replies
2.6k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 9.8 years ago by ▴ 160 • written 9.9 years ago by 65k
0
votes
1
reply
1.1k
views
New Package: annaffy
Annotation GO rgu34a probe Biobase annaffy Annotation GO rgu34a probe Biobase annaffy
updated 21.7 years ago by ★ 2.3k • written 21.7 years ago by ▴ 20
0
votes
0
replies
761
views
annaffy 0.9 Release
Annotation annaffy Annotation annaffy
20.8 years ago Colin A. Smith ▴ 220
0
votes
0
replies
653
views
annaffy 1.0 Release
annaffy annaffy
20.8 years ago Colin A. Smith ▴ 220
0
votes
4
replies
1.2k
views
rae230a/b data packages buggy?
Annotation rae230a rae230b affy annaffy Annotation rae230a rae230b affy annaffy
updated 20.7 years ago by ★ 2.9k • written 20.7 years ago by ▴ 110
0
votes
3
replies
1.1k
views
Recent changes to Bioconductor packages
genefilter affy graph Rgraphviz limma annaffy genefilter affy graph Rgraphviz limma
20.6 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
1
reply
765
views
annaffy installation
annaffy annaffy
updated 20.3 years ago by ★ 3.9k • written 20.3 years ago by ▴ 10
0
votes
0
replies
723
views
(no subject)
probe affy annaffy probe affy annaffy
20.3 years ago rkakkar@uchicago.edu ▴ 100
0
votes
1
reply
1.2k
views
Warning message with dChip method
Annotation Normalization GO Cancer moe430a moe430b cdf affy limma gcrma annaffy PROcess
updated 20.1 years ago by ★ 2.3k • written 20.1 years ago by ▴ 210
0
votes
0
replies
628
views
citation for AnnAffy?
annaffy annaffy
20.1 years ago Patrick Cahan ▴ 20
0
votes
1
reply
897
views
GO problems with annaffy
GO hgu133a probe reposTools annaffy GO hgu133a probe reposTools annaffy
updated 20.1 years ago by ▴ 100 • written 20.1 years ago by ▴ 10
0
votes
4
replies
990
views
Recent changes to Bioconductor packages
GO annaffy GO annaffy
20.0 years ago • updated 19.9 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
0
replies
735
views
Problem with obtaining annotation of mgu74av2 chip
Cancer mgu74av2 probe annotate annaffy Cancer mgu74av2 probe annotate annaffy
19.9 years ago Richard Friedman ★ 2.0k
0
votes
1
reply
906
views
error in annaffy (multiget)
annaffy annaffy
updated 19.8 years ago by ▴ 220 • written 19.8 years ago by ▴ 300
0
votes
0
replies
666
views
Annotate Package: How do I get the gene names and how do I write my matrix
Microarray Annotation Cancer annaffy convert Microarray Annotation Cancer annaffy convert
19.7 years ago James W. MacDonald 65k
0
votes
3
replies
1.1k
views
latest devel GO package not built in R2.0.0
GO mouse4302 affy annaffy GO mouse4302 affy annaffy
updated 19.6 years ago by ★ 2.9k • written 19.6 years ago by ★ 1.4k
0
votes
0
replies
1.1k
views
Installing Rv2.0.0 on MacOS 10.3.x
moe430a cdf probe annotate genefilter reposTools affy annaffy moe430a cdf probe affy
19.5 years ago rkakkar@uchicago.edu ▴ 100
0
votes
3
replies
1.2k
views
Install of 1.5 Packages fails
GO edd genefilter annaffy affyPLM marray GO edd genefilter annaffy affyPLM marray
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ★ 1.7k
0
votes
1
reply
1.1k
views
Problems with packages: annaffy, GO, KEGG, golubEsets
GO edd annaffy affyPLM GO edd annaffy affyPLM
updated 19.4 years ago by ★ 5.5k • written 19.4 years ago by ▴ 10
0
votes
0
replies
766
views
Problem with aafSymbol
hgu95av2 moe430a annaffy hgu95av2 moe430a annaffy
19.4 years ago Jeff Lande ▴ 110
0
votes
1
reply
664
views
annaffy's annotation update
annaffy annaffy
updated 19.3 years ago by ★ 5.5k • written 19.3 years ago by ▴ 210
0
votes
2
replies
1.5k
views
annaffy: YEAST vs. Affy YEAST_2 annotation
Annotation Yeast probe annaffy AnnBuilder Annotation Yeast probe annaffy AnnBuilder
updated 19.2 years ago by ▴ 220 • written 19.2 years ago by ▴ 320
0
votes
1
reply
991
views
annotation problem with hgu133plus2
Annotation GO hgu133plus2 cdf annotate affy siggenes annaffy Annotation GO hgu133plus2
18.9 years ago Yanqin Yang ▴ 250
0
votes
0
replies
832
views
annotation problem with hgu133plus2
GO cdf annotate reposTools affy siggenes annaffy GO cdf annotate reposTools affy
18.9 years ago Seth Falcon ★ 7.4k
0
votes
3
replies
1.0k
views
misnamed annotation environments with annaffy
Annotation annaffy Annotation annaffy
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ▴ 320
0
votes
6
replies
1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 1.4k
0
votes
4
replies
970
views
GO package
annaffy annaffy
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ▴ 490
0
votes
2
replies
1.1k
views
problem with annaffy aafFunction function
GO hgu95av2 rat2302 Biobase annotate reposTools affy annaffy GO hgu95av2 rat2302 affy
updated 18.5 years ago by 65k • written 18.5 years ago by ▴ 890
0
votes
1
reply
888
views
rbind in annaffy problem
GO hgu95av2 rat2302 cdf annotate affy graph annaffy RBGL GOstats biomaRt GO hgu95av2
updated 18.4 years ago by 65k • written 18.4 years ago by ▴ 890
0
votes
4
replies
1.4k
views
coerce aafTable object into dataframe (annaffy)
annaffy annaffy
18.2 years ago Georg Otto ▴ 510
0
votes
2
replies
1.1k
views
AnnBuilder problem for mu11ksuba
Organism mu11ksuba annotate limma gcrma matchprobes annaffy AnnBuilder Organism mu11ksuba
updated 18.1 years ago by ▴ 780 • written 18.1 years ago by ★ 1.4k
0
votes
1
reply
879
views
Annaffy problem loading metadata
mouse4302 annaffy mouse4302 annaffy
18.0 years ago Bornman, Daniel M ▴ 110
0
votes
1
reply
755
views
error in annaffy
annaffy annaffy
updated 17.0 years ago by 65k • written 17.0 years ago by ▴ 510
0
votes
2
replies
1.0k
views
2fold sigchanges from limma
GO Survival hgu133a2 annotate hexbin limma gcrma matchprobes annaffy GO Survival hexbin
updated 17.4 years ago by 50k • written 17.4 years ago by ▴ 60
0
votes
1
reply
1.1k
views
Problems with BioConductor 1.9 in R-2.4.1
annaffy annaffy
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 630
0
votes
1
reply
1.2k
views
annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 17.2 years ago by 65k • written 17.2 years ago by ▴ 320
0
votes
1
reply
1.0k
views
amigo links: gene ontology annotation for probes
Annotation GO Biobase annotate annaffy Annotation GO Biobase annotate annaffy
updated 17.2 years ago by ▴ 10 • written 17.2 years ago by ▴ 220
0
votes
1
reply
1.1k
views
topTable "resort.by" broken...
GO Survival Biobase annotate genefilter affy affydata graph gcrma matchprobes annaffy
updated 17.1 years ago by 50k • written 17.1 years ago by ★ 2.2k
0
votes
1
reply
1.4k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 17.1 years ago by 65k • written 17.1 years ago by ★ 2.2k
0
votes
2
replies
1.6k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 17.1 years ago by 50k • written 17.1 years ago by ▴ 680
0
votes
0
replies
1.1k
views
RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
17.0 years ago stephen edwards ▴ 10
0
votes
1
reply
756
views
OMIM and annaffy
affy annaffy affy annaffy
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 510
0
votes
0
replies
1.1k
views
MTP error
GO Survival multtest affy affydata annaffy affyPLM affyio GO Survival multtest affy
16.5 years ago Boel Brynedal ▴ 200
0
votes
2
replies
1.2k
views
getURL in annaffy fails when object length==1 (or how to cope with collapsed lists, arrays, etc?)
annaffy annaffy
updated 16.2 years ago by ▴ 540 • written 16.2 years ago by ▴ 30
0
votes
0
replies
1.2k
views
BioConductor Developer Workshop Lausanne 2008 Info
SNP Annotation annaffy AnnBuilder biomaRt cellHTS2 SNP Annotation annaffy AnnBuilder
16.2 years ago Darlene Goldstein ▴ 230
0
votes
0
replies
832
views
annaffy w/yeast2
yeast2 annaffy yeast2 annaffy
16.0 years ago Sebastien Gerega ▴ 370
0
votes
12
replies
2.0k
views
Building BioC 2.2 with R 2.7.0
GO annaffy simpleaffy GO annaffy simpleaffy
updated 15.9 years ago by ▴ 630 • written 15.9 years ago by ▴ 160
50 results • Page 1 of 1
Recent ...
Replies
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
Germany, just now
France, 3 minutes ago
WEHI, Melbourne, Australia, 3 minutes ago
India, 7 minutes ago
Germany, 10 minutes ago
Traffic: 945 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6