Showing : bioMart • reset
10
votes
10
replies
6.9k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 6 weeks ago by • 0 • written 6 months ago by ▴ 10
5
votes
4
replies
9.7k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 9 months ago by 65k • written 3.7 years ago by • 0
7
votes
5
replies
6.9k
views
biomaRt server error, and mirrors do not help
ensembl biomaRt R
updated 6 months ago by • 0 • written 2.0 years ago by ▴ 40
2
votes
2
replies
179
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 13 days ago by 65k • written 14 days ago by • 0
0
votes
3
replies
772
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 8 months ago by 16k • written 9 months ago by • 0
0
votes
3
replies
143
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 13 days ago by 65k • written 13 days ago by ▴ 30
7
votes
6
replies
4.1k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 6 months ago by 690 • written 20 months ago by ▴ 20
1
vote
4
replies
665
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
7 months ago andrew.b.kleist ▴ 10
1
vote
5
replies
603
views
Errors with makeTxDbFromBiomart
biomaRt
updated 8 months ago by 65k • written 8 months ago by ▴ 10
3
votes
3
replies
9.4k
views
How to find rsID with biomaRt in R
biomaRt
updated 12 weeks ago by 65k • written 3.2 years ago by ▴ 10
6
votes
9
replies
751
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 3 months ago by • 0 • written 3 months ago by • 0
0
votes
3
replies
380
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 5 months ago by ★ 3.3k • written 5 months ago by ▴ 30
0
votes
2
replies
398
views
Problem with loading ensembl version 105.
biomaRt
4 months ago RC • 0
4
votes
2
replies
359
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 3 months ago by ★ 3.9k • written 3 months ago by • 0
1
vote
4
replies
1.1k
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 6 weeks ago by 65k • written 4.0 years ago by • 0
1
vote
1
reply
393
views
Error with biomaRt
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
3
votes
2
replies
1.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 8 months ago by ★ 3.9k • written 8 months ago by ▴ 10
0
votes
1
reply
700
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 4 months ago by 65k • written 4 months ago by • 0
0
votes
3
replies
999
views
Problem installing biomaRt on mac
biomaRt mac
updated 8 months ago by ▴ 50 • written 17 months ago by • 0
22
votes
15
replies
7.4k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt RNASeqData R
updated 5 months ago by ▴ 10 • written 2.1 years ago by ▴ 50
4
votes
4
replies
1.7k
views
biomaRt error: database disk image is malformed
biomaRt
updated 11 months ago by • 0 • written 2.6 years ago by ▴ 10
0
votes
1
reply
618
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 9 months ago by 65k • written 9 months ago by • 0
0
votes
10
replies
810
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
5 months ago • updated 8 weeks ago ScafioRuo • 0
1
vote
2
replies
607
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
9 months ago Miguel • 0
0
votes
1
reply
220
views
biomaRt issue
biomaRt
updated 12 weeks ago by ★ 6.5k • written 12 weeks ago by • 0
0
votes
1
reply
287
views
error in mapIds function
mapIds biomaRt
updated 9 weeks ago by 690 • written 9 weeks ago by • 0
0
votes
2
replies
363
views
Biomart - upstream region of 'coding'
biomaRt
updated 7 months ago by ★ 6.5k • written 7 months ago by ▴ 20
4
votes
12
replies
961
views
Ensembl down???
biomaRt
5 months ago • updated 4 months ago bas_work ▴ 30
0
votes
1
reply
828
views
multiple filters in biomaRt
biomaRt
updated 10 months ago by ▴ 10 • written 11 months ago by • 0
2
votes
4
replies
932
views
Use with_go along with other filters in getBM function
Annotation biomaRt
11 months ago RuBBiT0 ▴ 10
0
votes
2
replies
455
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
11 weeks ago eefernan5 • 0
0
votes
1
reply
140
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 4 weeks ago by 65k • written 4 weeks ago by • 0
0
votes
2
replies
697
views
biomart not ound some prevous release
biomart rnaseq
written 5.2 years ago by ▴ 40
1
vote
2
replies
649
views
How to find stop codons for a list of genes
stopcodon biomaRt
5 months ago Marek Gierlinski ▴ 30
1
vote
7
replies
4.4k
views
Problems Installing biomaRt
biomaRt
updated 5 months ago by 65k • written 2.1 years ago by ▴ 20
3
votes
2
replies
421
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
5 months ago henrydionne ▴ 10
0
votes
3
replies
1.4k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 12 months ago by ▴ 30
0
votes
1
reply
960
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 2.5 years ago by • 0
1
vote
5
replies
419
views
BiomaRt download data error
biomaRt
updated 12 weeks ago by ★ 6.5k • written 12 weeks ago by • 0
2
votes
2
replies
640
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
3 months ago bd2000 ▴ 30
0
votes
0
replies
375
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
8 months ago ali.oghabian • 0
1
vote
2
replies
790
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by ★ 6.5k • written 11 months ago by • 0
1
vote
0
replies
203
views
News: Ensembl 111 has been released
Ensembl biomaRt
3 months ago Benjamin ▴ 30
0
votes
1
reply
1.5k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 9 months ago by 41k • written 9 months ago by ▴ 30
0
votes
3
replies
469
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 6 months ago by 50k • written 6 months ago by • 0
1
vote
1
reply
225
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 11 weeks ago by • 0 • written 12 weeks ago by ▴ 10
46 results • Page 1 of 1
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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