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Showing :
biomart
•
reset
0
votes
0
replies
34
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets
allele_freq
biomaRt
getBM
1 day ago • updated 5 hours ago
Abiologist
• 0
1
vote
0
replies
59
views
News:
Ensembl 112 has been released.
ensembldb
biomaRt
ensemblrelease
5 days ago
Aleena
▴ 30
0
votes
3
replies
175
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 29 days ago by
James W. MacDonald
65k • written 4 weeks ago by
bas_work
▴ 30
2
votes
2
replies
220
views
OrgDb for maize
clusterProfiler
OrgDb
biomaRt
Zea_mays
updated 4 weeks ago by
James W. MacDonald
65k • written 4 weeks ago by
sansan
• 0
0
votes
1
reply
167
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 6 weeks ago by
James W. MacDonald
65k • written 6 weeks ago by
Reeya
• 0
0
votes
1
reply
328
views
error in mapIds function
mapIds
biomaRt
updated 11 weeks ago by
Marcel Ramos
700 • written 12 weeks ago by
Regina
• 0
0
votes
2
replies
489
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
3 months ago
eefernan5
• 0
1
vote
1
reply
248
views
502 error biomaRt getLDS()
ensembldb
biomaRt
updated 3 months ago by
Robin
• 0 • written 3 months ago by
Pez
▴ 10
0
votes
1
reply
236
views
biomaRt issue
biomaRt
updated 3 months ago by
Mike Smith
★ 6.5k • written 3 months ago by
Fariz
• 0
1
vote
5
replies
484
views
BiomaRt download data error
biomaRt
updated 3 months ago by
Mike Smith
★ 6.5k • written 3 months ago by
Max Bone
• 0
6
votes
9
replies
862
views
biomaRt has encountered an unknown server error.
biomaRt
host
useEnsembl
updated 3 months ago by
alexander3
• 0 • written 3 months ago by
Amparo
• 0
1
vote
1
reply
462
views
Error with biomaRt
biomaRt
updated 4 months ago by
Mike Smith
★ 6.5k • written 4 months ago by
goldenboy
• 0
4
votes
2
replies
395
views
Enrichement with clusterProfiler and biomart
biomaRt
clusterProfiler
Zea_mays
updated 4 months ago by
Guido Hooiveld
★ 4.0k • written 4 months ago by
sansan
• 0
2
votes
2
replies
686
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
4 months ago
bd2000
▴ 30
1
vote
0
replies
239
views
News:
Ensembl 111 has been released
Ensembl
biomaRt
4 months ago
Benjamin
▴ 30
0
votes
2
replies
419
views
Problem with loading ensembl version 105.
biomaRt
4 months ago
RC
• 0
0
votes
1
reply
762
views
biomaRt_getBM_Failed to collect lazy table
getBM
biomaRt
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
ai.yaku
• 0
0
votes
3
replies
431
views
Obtaining rsIDs with ENSG and variant ID information
rsid
biomaRt
updated 5 months ago by
Robert Castelo
★ 3.3k • written 5 months ago by
bd2000
▴ 30
4
votes
12
replies
1.0k
views
Ensembl down???
biomaRt
5 months ago
bas_work
▴ 30
3
votes
2
replies
453
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
5 months ago
henrydionne
▴ 10
1
vote
2
replies
703
views
How to find stop codons for a list of genes
stopcodon
biomaRt
5 months ago
Marek Gierlinski
▴ 30
0
votes
10
replies
849
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R
BioMart
biomaRt
6 months ago • updated 11 weeks ago
ScafioRuo
• 0
10
votes
10
replies
7.4k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 8 weeks ago by
juo5
• 0 • written 6 months ago by
Abhishek
▴ 10
0
votes
3
replies
496
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 6 months ago by
Gordon Smyth
50k • written 6 months ago by
Marilyn
• 0
1
vote
4
replies
698
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
7 months ago
andrew.b.kleist
▴ 10
0
votes
2
replies
384
views
Biomart - upstream region of 'coding'
biomaRt
updated 8 months ago by
Mike Smith
★ 6.5k • written 8 months ago by
andrebolerbarros
▴ 20
0
votes
0
replies
397
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
9 months ago
ali.oghabian
• 0
3
votes
2
replies
1.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG
DESeq2
biomaRt
clusterProfiler
org.Mm.eg.db
updated 9 months ago by
Guido Hooiveld
★ 4.0k • written 9 months ago by
Milan
▴ 10
1
vote
5
replies
625
views
Errors with makeTxDbFromBiomart
biomaRt
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
Jerina
▴ 10
1
vote
2
replies
639
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl
R
biomaRt
9 months ago
Miguel
• 0
0
votes
3
replies
808
views
Error with makeTxDbFromBiomart
DEXSeq
biomaRt
updated 9 months ago by
Hervé Pagès
16k • written 9 months ago by
anavmar1
• 0
0
votes
1
reply
638
views
Trouble using biomaRt to pull pathway genes from GO
GO
biomaRt
updated 10 months ago by
James W. MacDonald
65k • written 10 months ago by
cstorer
• 0
0
votes
1
reply
1.6k
views
News:
News:Ensembl 110 has been released
ensembldb
biomaRt
updated 10 months ago by
Michael Love
42k • written 10 months ago by
Benjamin
▴ 30
2
votes
4
replies
978
views
Use with_go along with other filters in getBM function
Annotation
biomaRt
12 months ago • updated 11 months ago
RuBBiT0
▴ 10
1
vote
2
replies
824
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by
Mike Smith
★ 6.5k • written 12 months ago by
Yijing
• 0
0
votes
1
reply
848
views
multiple filters in biomaRt
biomaRt
updated 11 months ago by
RuBBiT0
▴ 10 • written 12 months ago by
Yijing
• 0
0
votes
3
replies
598
views
BioMart Error message when pulling sequences
biomaRt
bioma
updated 13 months ago by
Mike Smith
★ 6.5k • written 13 months ago by
Luca
• 0
0
votes
3
replies
1.4k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 13 months ago by
nhaus
▴ 30
0
votes
1
reply
1.4k
views
biomaRt - NameSpace loading failed
biomaRt
bioma
updated 13 months ago by
Mike Smith
★ 6.5k • written 13 months ago by
Alessia
• 0
0
votes
3
replies
694
views
BiomaRt: problems annotating a list of DEGs from DESeq2
biomaRt
updated 13 months ago by
Michael Love
42k • written 13 months ago by
alan.g.hudson
• 0
0
votes
2
replies
1.1k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt
ensembldb
RNA
ensembl
updated 13 months ago by
Johannes Rainer
★ 2.0k • written 13 months ago by
Christopher
• 0
0
votes
3
replies
735
views
How to getting synonymous SNPs from BiomaRt before timing out?
biomaRt
SNP
updated 13 months ago by
James W. MacDonald
65k • written 14 months ago by
Damien
• 0
0
votes
2
replies
800
views
Retrieving true orthologs between species BiomaRt
Orthologs
BiomaRt
updated 14 months ago by
James W. MacDonald
65k • written 14 months ago by
Colin
• 0
0
votes
4
replies
984
views
Write an annotated DESEQ2 counts CSV, pls help.
DESeq2
biomaRt
R
15 months ago
Dr.
• 0
0
votes
0
replies
711
views
BiomaRt - Problem to access homolog lists
biomaRt
ensembldb
15 months ago
ginie.dub
• 0
3
votes
3
replies
1.7k
views
transcript name mapping between human and mouse
biomaRt
getLDS
updated 15 months ago by
James W. MacDonald
65k • written 15 months ago by
Eric
▴ 20
1
vote
4
replies
744
views
mmc57bl6nj_gene_ensembl biomaRt
biomaRt
16 months ago
Maryam
• 0
1
vote
3
replies
860
views
Convert Chromosome postion to gene symbol
biomaRt
ensembldb
17 months ago
mbansal
• 0
1
vote
3
replies
795
views
Older source of biocFileCache package
biomaRt
updated 17 months ago by
Mike Smith
★ 6.5k • written 18 months ago by
julian.konzok
• 0
1
vote
3
replies
1.5k
views
Error using biomaRt
biomaRt
updated 18 months ago by
Mike Smith
★ 6.5k • written 18 months ago by
arantes_gabriel
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Answer: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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