Showing : biomart • reset
0
votes
2
replies
144
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
8 days ago • updated 5 days ago landenshanie ▴ 40
0
votes
0
replies
64
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
10 days ago • updated 9 days ago Abiologist • 0
1
vote
0
replies
93
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
14 days ago Aleena ▴ 30
1
vote
3
replies
219
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 5 weeks ago by 66k • written 5 weeks ago by ▴ 30
2
votes
2
replies
250
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 5 weeks ago by 66k • written 5 weeks ago by • 0
0
votes
1
reply
178
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 8 weeks ago by 66k • written 8 weeks ago by • 0
0
votes
2
replies
712
views
biomart not ound some prevous release
biomart rnaseq
written 5.3 years ago by ▴ 40
1
vote
4
replies
1.2k
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 9 weeks ago by 66k • written 4.1 years ago by • 0
11
votes
10
replies
7.7k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 9 weeks ago by • 0 • written 7 months ago by ▴ 20
0
votes
10
replies
867
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
6 months ago • updated 12 weeks ago ScafioRuo • 0
0
votes
1
reply
344
views
error in mapIds function
mapIds biomaRt
updated 3 months ago by 700 • written 3 months ago by • 0
0
votes
2
replies
509
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
3 months ago eefernan5 • 0
1
vote
1
reply
253
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 3 months ago by • 0 • written 3 months ago by ▴ 10
3
votes
3
replies
9.6k
views
How to find rsID with biomaRt in R
biomaRt
updated 3 months ago by 66k • written 3.2 years ago by ▴ 10
0
votes
1
reply
242
views
biomaRt issue
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
1
vote
5
replies
525
views
BiomaRt download data error
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
6
votes
9
replies
922
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 3 months ago by • 0 • written 4 months ago by • 0
1
vote
1
reply
508
views
Error with biomaRt
biomaRt
updated 4 months ago by ★ 6.5k • written 4 months ago by • 0
4
votes
2
replies
424
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 4 months ago by ★ 4.0k • written 4 months ago by • 0
2
votes
2
replies
701
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
4 months ago bd2000 ▴ 30
1
vote
0
replies
253
views
News: Ensembl 111 has been released
Ensembl biomaRt
4 months ago Benjamin ▴ 30
0
votes
2
replies
433
views
Problem with loading ensembl version 105.
biomaRt
5 months ago RC • 0
0
votes
1
reply
787
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 5 months ago by 66k • written 5 months ago by • 0
4
votes
12
replies
1.0k
views
Ensembl down???
biomaRt
6 months ago • updated 5 months ago bas_work ▴ 30
0
votes
3
replies
459
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 5 months ago by ★ 3.3k • written 5 months ago by ▴ 30
3
votes
2
replies
468
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
6 months ago henrydionne ▴ 10
0
votes
1
reply
1.0k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 2.5 years ago by • 0
1
vote
2
replies
739
views
How to find stop codons for a list of genes
stopcodon biomaRt
6 months ago Marek Gierlinski ▴ 30
1
vote
7
replies
4.6k
views
Problems Installing biomaRt
biomaRt
updated 6 months ago by 66k • written 2.1 years ago by ▴ 20
22
votes
15
replies
7.6k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt RNASeqData R
updated 6 months ago by ▴ 10 • written 2.1 years ago by ▴ 50
0
votes
3
replies
509
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 7 months ago by 50k • written 7 months ago by • 0
0
votes
3
replies
1.5k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 13 months ago by ▴ 40
7
votes
5
replies
7.2k
views
biomaRt server error, and mirrors do not help
ensembl biomaRt R
updated 7 months ago by • 0 • written 2.1 years ago by ▴ 40
7
votes
6
replies
4.4k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 7 months ago by 700 • written 21 months ago by ▴ 20
1
vote
4
replies
718
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
8 months ago andrew.b.kleist ▴ 10
0
votes
2
replies
394
views
Biomart - upstream region of 'coding'
biomaRt
updated 8 months ago by ★ 6.5k • written 8 months ago by ▴ 20
0
votes
0
replies
403
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
9 months ago ali.oghabian • 0
1
vote
5
replies
641
views
Errors with makeTxDbFromBiomart
biomaRt
updated 9 months ago by 66k • written 9 months ago by ▴ 10
3
votes
2
replies
1.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 9 months ago by ★ 4.0k • written 9 months ago by ▴ 10
0
votes
3
replies
1.0k
views
Problem installing biomaRt on mac
biomaRt mac
updated 9 months ago by ▴ 60 • written 18 months ago by • 0
0
votes
3
replies
827
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 9 months ago by 16k • written 10 months ago by • 0
1
vote
2
replies
658
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
10 months ago Miguel • 0
0
votes
1
reply
1.6k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 10 months ago by 42k • written 10 months ago by ▴ 30
0
votes
1
reply
646
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 10 months ago by 66k • written 10 months ago by • 0
5
votes
4
replies
9.9k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 10 months ago by 66k • written 3.8 years ago by • 0
0
votes
1
reply
860
views
multiple filters in biomaRt
biomaRt
updated 11 months ago by ▴ 10 • written 12 months ago by • 0
2
votes
4
replies
997
views
Use with_go along with other filters in getBM function
Annotation biomaRt
12 months ago RuBBiT0 ▴ 10
1
vote
2
replies
834
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 12 months ago by ★ 6.5k • written 12 months ago by • 0
4
votes
4
replies
1.8k
views
biomaRt error: database disk image is malformed
biomaRt
updated 12 months ago by • 0 • written 2.6 years ago by ▴ 10
0
votes
3
replies
613
views
BioMart Error message when pulling sequences
biomaRt bioma
updated 13 months ago by ★ 6.5k • written 13 months ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Cannot install oligo on Fedora by Guido Hooiveld ★ 4.0k
Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…
Comment: Error in gseDO function by Guido Hooiveld ★ 4.0k
I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…
Comment: Counter-directional LFC shrinkage by ATpoint ★ 4.2k
Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.
Answer: ChAMP not available for bioconductor 3.19 by shepherl 3.9k
See https://support.bioconductor.org/p/9158324/#9158336 . We have reached out to goseq to fix the package; we have a community member …
Votes
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
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