Bioconductor Boxplot

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VST deseq2 boxplot rnaseq

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by Konstantinos Yeles ▴ 80

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gviz boxplot

updated 8.0 years ago by florian.hahne@novartis.com ★ 1.6k • written 8.1 years ago by enricoferrero ▴ 660

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boxplot microarray pd.hugene.2.0.st

9.1 years ago kanacska ▴ 10

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461

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t.test boxplot limma anova

5 weeks ago Chris ▴ 10

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808

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knitr boxplot

updated 4.3 years ago by James W. MacDonald 65k • written 4.3 years ago by poojitha.stemcell ▴ 10

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affy package boxplot hgu133plus2 oligo package

updated 7.2 years ago by James W. MacDonald 65k • written 7.2 years ago by Javier Pérez Florido ▴ 840

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edgeR boxplot

7.3 years ago snowru • 0

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1.5k

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boxplot reads fastq sequencing rsubread

updated 5.0 years ago by Wei Shi ★ 3.6k • written 5.0 years ago by Raito92 ▴ 60

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671

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boxplot software error

updated 5.1 years ago by Gordon Smyth 50k • written 5.1 years ago by Raito92 ▴ 60

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996

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boxplot

updated 7.2 years ago by Peter Langfelder ★ 3.0k • written 7.2 years ago by farahqureshi5 • 0

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Rle boxplot

9.3 years ago Johannes Rainer ★ 2.0k

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boxplot bioconductor R error

4.4 years ago l154359 • 0

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574

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boxplot ggplot2

updated 15 months ago by ATpoint ★ 4.1k • written 15 months ago by Sooni ▴ 10

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663

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boxplot affymetrix data diferential expression

5.1 years ago pratikshasharma47 • 0

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738

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affy boxplot

5.1 years ago pratikshasharma47 • 0

15 results • Page 1 of 1

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180