Bioconductor Boxplot

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4.9k

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VST deseq2 boxplot rnaseq

updated 5.9 years ago by Michael Love 41k • written 5.9 years ago by Konstantinos Yeles ▴ 80

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2.0k

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gviz boxplot

updated 8.0 years ago by florian.hahne@novartis.com ★ 1.6k • written 8.0 years ago by enricoferrero ▴ 660

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397

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t.test boxplot limma anova

25 days ago Chris • 0

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664

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boxplot software error

updated 5.1 years ago by Gordon Smyth 50k • written 5.1 years ago by Raito92 ▴ 60

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1.4k

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boxplot reads fastq sequencing rsubread

updated 4.9 years ago by Wei Shi ★ 3.6k • written 4.9 years ago by Raito92 ▴ 60

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660

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boxplot affymetrix data diferential expression

5.1 years ago pratikshasharma47 • 0

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edgeR boxplot

7.2 years ago snowru • 0

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1.7k

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boxplot microarray pd.hugene.2.0.st

9.1 years ago • updated 9.0 years ago kanacska ▴ 10

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1.2k

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Rle boxplot

9.3 years ago Johannes Rainer ★ 2.0k

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997

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boxplot bioconductor R error

4.4 years ago l154359 • 0

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792

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knitr boxplot

updated 4.3 years ago by James W. MacDonald 65k • written 4.3 years ago by poojitha.stemcell ▴ 10

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982

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boxplot

updated 7.1 years ago by Peter Langfelder ★ 3.0k • written 7.1 years ago by farahqureshi5 • 0

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4.5k

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affy package boxplot hgu133plus2 oligo package

updated 7.2 years ago by James W. MacDonald 65k • written 7.2 years ago by Javier Pérez Florido ▴ 840

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567

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boxplot ggplot2

updated 14 months ago by ATpoint ★ 4.1k • written 15 months ago by Sooni ▴ 10

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732

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affy boxplot

5.1 years ago pratikshasharma47 • 0

15 results • Page 1 of 1

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Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

Votes

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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