Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
cluster
•
reset
2
votes
4
replies
4.3k
views
Error and questions about clustering & ploting functions in r packages cluster and mclust regarding kmeans method
cluster
mclust
limma
clusplot
kmeans
8.8 years ago
svlachavas
▴ 830
0
votes
3
replies
3.0k
views
RnBeads cannot locate libjasper.so.1
rnbeads
gs
ghostscript
shared libraries
cluster
8.8 years ago
bmreilly
• 0
0
votes
2
replies
2.0k
views
cluster composition in Mfuzz package
cluster
mfuzz
gene names
updated 8.1 years ago by
Assa Yeroslaviz
★ 1.5k • written 8.1 years ago by
thomas.dobrenel
• 0
0
votes
1
reply
2.0k
views
Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
Network
cluster
WGCNA
RNASeq
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
chiwut.wong
• 0
1
vote
2
replies
1.8k
views
ident function in sce
SingleCellExperiment
cluster
identities
sce
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.0 years ago by
reinepapillon
• 0
4
votes
3
replies
1.5k
views
SingleCellExperiment: Edit cluster IDs in colLabels
scran
Clustering
SingleCellExperiment
annotate
cluster
updated 21 months ago by
James W. MacDonald
65k • written 21 months ago by
achoppe
▴ 10
1
vote
7
replies
1.4k
views
Adding geneID to list of gene locus IDs
cluster
OrgDb
clusterProfiler
written 17 months ago by
Chruut
• 0
1
vote
2
replies
1.4k
views
Counting the no. of mutational clusters of each class, or kataegis
cluster
8.3 years ago
niavarani
▴ 10
0
votes
5
replies
1.3k
views
enrichKEGG function error
cluster
clusterProfiler
KEGG
12 months ago • updated 11 months ago
ruba-mahmoud
• 0
0
votes
6
replies
1.2k
views
Error when trying to access BiomaRt from a cluster
biomaRt
R
cluster
updated 3.8 years ago by
Martin Morgan
25k • written 3.8 years ago by
camerond
• 0
0
votes
1
reply
1.2k
views
error when genomeFile too big when running Quasr on >3 clusters
quasr
parallel
cluster
8.2 years ago
rna seq
▴ 90
0
votes
0
replies
762
views
Only 1 gene/ feature is present in module after WGCNA analysis
RNASeq
Clustering
cluster
WGCNA
2.0 years ago
chiwut.wong
• 0
0
votes
0
replies
701
views
using gene expression matrix for TCseq package to cluster genes
TCseq
microwarray
cluster
counts
normalization
4.8 years ago
bioyas
▴ 10
0
votes
0
replies
606
views
How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster
qpcr
qpcrNorm
clusterProfiler
HTqPCR
18 months ago
Javier
• 0
14 results • Page
1 of 1
Recent ...
Replies
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma
by
James W. MacDonald
65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! That is a great tip. cameraRes <- camera(numeric_matrix, geneSets, inter.gene.cor=0.01, design) Error in Stat[iset]…
Votes
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
Answer: Help with error using camera() in limma
Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
Awards
• All
Scholar
to
James W. MacDonald
65k
Popular Question
to
jeffrey.maurer
• 0
Centurion
to
Chris
• 0
Commentator
to
Leonard Goldstein
▴ 200
Popular Question
to
Matthew Ritchie
▴ 1000
Locations
• All
United States,
6 minutes ago
United States,
9 minutes ago
United States,
12 minutes ago
United States,
15 minutes ago
United States,
17 minutes ago
Traffic: 723 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6