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BioC2024 deadlines approaching
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Bioconductor
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3 days ago
Maria Doyle
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Maria Doyle
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Maria Doyle
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11 months ago
Maria Doyle
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RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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Maria Doyle
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Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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12 months ago
Maria Doyle
▴ 70
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Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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12 months ago
Maria Doyle
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12 months ago
Maria Doyle
▴ 70
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written 15 months ago by
Maria Doyle
▴ 70
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EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
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Bioconductor
14 months ago
Maria Doyle
▴ 70
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473
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14 months ago
Maria Doyle
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15 months ago
Maria Doyle
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Maria Doyle
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23 months ago
Matthew Ritchie
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shepherl
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2.3 years ago • updated 2.2 years ago
shepherl
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2.8 years ago
shepherl
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3.0 years ago
Charlotte Soneson
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3.0 years ago
shepherl
3.9k
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3.1 years ago
Matthew Ritchie
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• 0 • written 3.3 years ago by
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Matthew Ritchie
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7
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21k • written 4.2 years ago by
Matthew Ritchie
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735
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4.3 years ago
Matthew Ritchie
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4.6 years ago
Matthew Ritchie
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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