Bioconductor Continuous

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6.4k

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limma covariate continuous categorical adjustment

updated 8.8 years ago by Gordon Smyth 50k • written 8.8 years ago by sg45653 • 0

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2.7k

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limma voom continuous interactions confounding

7.6 years ago lanhuong ▴ 20

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5.4k

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limma design matrix design and contrast matrix continuous interactions

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by jaison75 ▴ 20

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1.6k

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edger design matrix continuous

updated 2.2 years ago by Tongjun • 0 • written 6.0 years ago by ashley.lu • 0

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1.6k

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deseq2 p-value continuous deseq

5.2 years ago ariel ▴ 20

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1.4k

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metagenomeseq continuous limma

7.8 years ago pjgalli2 • 0

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1.9k

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deseq2 ruvseq covariates continuous vsd

updated 8.1 years ago by Michael Love 41k • written 8.1 years ago by Mattia ▴ 10

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780

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edger continuous regression

updated 5.2 years ago by James W. MacDonald 65k • written 5.2 years ago by emb13 • 0

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1.4k

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WGCNA batch effect continuous

updated 5.2 years ago by Peter Langfelder ★ 3.0k • written 5.2 years ago by cats_dogs ▴ 20

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742

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Contrast design DESeq2 continuous

updated 2.4 years ago by Michael Love 41k • written 2.4 years ago by tiansy • 0

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547

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DESeq2 LRT continuous coeficients

updated 15 months ago by Michael Love 41k • written 15 months ago by Laia ▴ 10

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1.1k

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DESeq2 continuous

7.8 years ago pjgalli2 • 0

12 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0