Bioconductor Continuous

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votes

549

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DESeq2 LRT continuous coeficients

updated 15 months ago by Michael Love 41k • written 15 months ago by Laia ▴ 10

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743

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Contrast design DESeq2 continuous

updated 2.4 years ago by Michael Love 41k • written 2.4 years ago by tiansy • 0

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1.6k

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deseq2 p-value continuous deseq

5.2 years ago ariel ▴ 20

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1.4k

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WGCNA batch effect continuous

updated 5.2 years ago by Peter Langfelder ★ 3.0k • written 5.2 years ago by cats_dogs ▴ 20

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782

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edger continuous regression

updated 5.2 years ago by James W. MacDonald 65k • written 5.2 years ago by emb13 • 0

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1.6k

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edger design matrix continuous

updated 2.2 years ago by Tongjun • 0 • written 6.0 years ago by ashley.lu • 0

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2.7k

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limma voom continuous interactions confounding

7.6 years ago lanhuong ▴ 20

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1.1k

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DESeq2 continuous

7.8 years ago pjgalli2 • 0

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1.4k

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metagenomeseq continuous limma

7.8 years ago pjgalli2 • 0

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1.9k

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deseq2 ruvseq covariates continuous vsd

updated 8.1 years ago by Michael Love 41k • written 8.1 years ago by Mattia ▴ 10

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5.4k

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limma design matrix design and contrast matrix continuous interactions

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by jaison75 ▴ 20

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6.4k

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limma covariate continuous categorical adjustment

updated 8.8 years ago by Gordon Smyth 50k • written 8.8 years ago by sg45653 • 0

12 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length