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dada2
•
reset
0
votes
2
replies
810
views
Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phyloseq
DECIPHER
taxonomyassignment
phyloseq
dada2
Pr2V5
updated 5 months ago by
Daniel
• 0 • written 7 months ago by
Maggie
• 0
0
votes
4
replies
1.7k
views
Trouble Installing DADA2 (warning: R new user)
dada2
updated 14 months ago by
shepherl
4.2k • written 14 months ago by
schott01
• 0
0
votes
2
replies
1.1k
views
Species level information couldn't find with DADA2 bioconductor package
Metagenomics
dada2
MicrobiomeData
14 months ago • updated 12 months ago
abhisek001
• 0
0
votes
1
reply
726
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor
dada2
15 months ago • updated 14 months ago
abhisek001
• 0
0
votes
0
replies
693
views
is Dada2 biased toward a particular sequence ?
virology
dada2
amplican
Sequencing
RNASeq
22 months ago
Sara
• 0
0
votes
0
replies
771
views
Using DADA2 for finding viral sequence variants
VariantDetection
dada2
RNASeq
22 months ago
Sara
• 0
2
votes
2
replies
841
views
Broken UNITE 9.0 link (General FASTA Release)
dada2
UNITE
2.0 years ago
GlycineMax
• 0
0
votes
14
replies
3.2k
views
Trouble downloading dada2
dada
dada2
2.5 years ago
elliottchon97
• 0
0
votes
3
replies
1.6k
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 2.7 years ago by
Erik Wright
▴ 150 • written 2.7 years ago by
Nelli
• 0
0
votes
2
replies
1.4k
views
Microbiome 16S amplicon analysis in dada2
bioinformatics
DADA2
3.0 years ago
anasjamshed1994
• 0
1
vote
3
replies
1.7k
views
Assign taxonomy is not working
Assigntaxonomy
dada2
updated 3.4 years ago by
shepherl
4.2k • written 3.4 years ago by
safiq713
• 0
27
votes
13
replies
19k
views
problems about installation of package ‘Rhtslib’, ‘Rsamtools’ ,‘GenomicAlignments’ , ‘ShortRead’ on macOS Big Sur using R 4.1.0
dada2
updated 2.6 years ago by
Yoon Young
• 0 • written 4.3 years ago by
lh290
▴ 60
0
votes
4
replies
2.6k
views
Cannot install Phyloseq and dada2
GenomeInfoDbData
phyloseq
dada2
3.6 years ago
ymtan
• 0
0
votes
0
replies
1.2k
views
Construct a phyloseq object directly from the dada2 outputs
phyloseq
dada2
4.0 years ago
Manijeh
• 0
0
votes
0
replies
1.4k
views
dada2 (derepFastaq function) 'Calloc' could not allocate memory (1000000 of 16 bytes) in r version 4.1.0
dada2
4.1 years ago
Yoan
• 0
0
votes
5
replies
3.1k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 4.3 years ago by
fabian.roger08
▴ 10 • written 5.6 years ago by
fabian.roger
• 0
0
votes
1
reply
1.1k
views
FDR Correction
dada2
Metagenomics
DESeq2
updated 4.3 years ago by
Michael Love
43k • written 4.3 years ago by
GlycineMax
• 0
4
votes
8
replies
5.3k
views
Is there a different way to generate a tree for phyloseq object
r
dada2
Bioconductor
updated 4.3 years ago by
Axel Klenk
★ 1.1k • written 4.3 years ago by
mschmidt
▴ 10
0
votes
0
replies
1.4k
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
4.4 years ago
anrongloh
• 0
1
vote
1
reply
5.3k
views
Setting up bioconductor on a Linux server using conda
dada2
conda
phyloseq
updated 4.4 years ago by
James W. MacDonald
68k • written 4.4 years ago by
Daniel
• 0
0
votes
0
replies
1.5k
views
from raw reads ASV table - dada2 - small number of merged pairs
dada2
515F - 806Rd
5.4 years ago
beginner87
• 0
0
votes
1
reply
2.3k
views
Error: record does not start with '@'
DADA2
.fq
updated 6.6 years ago by
James W. MacDonald
68k • written 6.6 years ago by
mafusa20
• 0
0
votes
1
reply
1.4k
views
Cannot Update Biostrings to Latest Version
dada2
biostrings
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
gradypierroz
• 0
4
votes
4
replies
3.1k
views
Using DADA2 output for DESeq2
deseq2
dada2
updated 7.5 years ago by
benjamin.j.callahan
▴ 50 • written 7.5 years ago by
blastzone.heimerdinger
▴ 20
0
votes
1
reply
2.1k
views
dada2 unavailable for R 3.4.1
bioconductor
R
dada2
updated 8.0 years ago by
daniel.vantwisk
▴ 50 • written 8.0 years ago by
rggriggs
• 0
1
vote
7
replies
20k
views
Dada2 and GenomeInfoDbData installation
dada2
GenomeInfoDbData
updated 8.2 years ago by
jiangjing_ing
• 0 • written 8.3 years ago by
navlern
• 0
26 results • Page
1 of 1
Recent ...
Replies
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
▴ 200
I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
James W. MacDonald
68k
Not sure I understand. You ask how to do something and then show how one would do so.
Comment: DiffBind getting Fold values of near 0
by
littlefishes20
▴ 10
Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
▴ 200
I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …
Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel
by
James W. MacDonald
68k
Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…
Votes
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
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