Showing : dada2 • reset
0
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15
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1.4k
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Species level information couldn't find with DADA2 bioconductor package
Metagenomics dada2 MicrobiomeData
written 19 months ago by • 0
0
votes
2
replies
1.1k
views
Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phyloseq
DECIPHER taxonomyassignment phyloseq dada2 Pr2V5
updated 10 months ago by • 0 • written 13 months ago by • 0
0
votes
4
replies
2.1k
views
Trouble Installing DADA2 (warning: R new user)
dada2
updated 19 months ago by 4.3k • written 19 months ago by • 0
0
votes
1
reply
919
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor dada2
20 months ago • updated 19 months ago abhisek001 • 0
0
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0
replies
786
views
is Dada2 biased toward a particular sequence ?
virology dada2 amplican Sequencing RNASeq
2.3 years ago Sara • 0
0
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0
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1.0k
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Using DADA2 for finding viral sequence variants
VariantDetection dada2 RNASeq
2.3 years ago Sara • 0
2
votes
2
replies
1.0k
views
Broken UNITE 9.0 link (General FASTA Release)
dada2 UNITE
2.5 years ago GlycineMax • 0
0
votes
14
replies
3.5k
views
Trouble downloading dada2
dada dada2
3.0 years ago elliottchon97 • 0
0
votes
3
replies
1.8k
views
Problem with multiple sequence alignment using AlignSeqs
R dada2 DECIPHER
updated 3.2 years ago by ▴ 150 • written 3.2 years ago by • 0
0
votes
2
replies
1.6k
views
Microbiome 16S amplicon analysis in dada2
bioinformatics DADA2
3.5 years ago anasjamshed1994 • 0
1
vote
3
replies
1.8k
views
Assign taxonomy is not working
Assigntaxonomy dada2
updated 3.8 years ago by 4.3k • written 3.8 years ago by • 0
27
votes
13
replies
20k
views
problems about installation of package ‘Rhtslib’, ‘Rsamtools’ ,‘GenomicAlignments’ , ‘ShortRead’ on macOS Big Sur using R 4.1.0
dada2
updated 3.0 years ago by • 0 • written 4.7 years ago by ▴ 60
0
votes
4
replies
2.8k
views
Cannot install Phyloseq and dada2
GenomeInfoDbData phyloseq dada2
4.1 years ago • updated 4.0 years ago ymtan • 0
0
votes
0
replies
1.3k
views
Construct a phyloseq object directly from the dada2 outputs
phyloseq dada2
4.5 years ago Manijeh • 0
0
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0
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1.5k
views
dada2 (derepFastaq function) 'Calloc' could not allocate memory (1000000 of 16 bytes) in r version 4.1.0
dada2
4.5 years ago Yoan • 0
0
votes
5
replies
3.6k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher dada2
updated 4.7 years ago by ▴ 10 • written 6.0 years ago by • 0
0
votes
1
reply
1.2k
views
FDR Correction
dada2 Metagenomics DESeq2
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
4
votes
8
replies
5.6k
views
Is there a different way to generate a tree for phyloseq object
r dada2 Bioconductor
updated 4.8 years ago by ★ 1.1k • written 4.8 years ago by ▴ 10
0
votes
0
replies
1.6k
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER dada2
4.8 years ago anrongloh • 0
1
vote
1
reply
6.2k
views
Setting up bioconductor on a Linux server using conda
dada2 conda phyloseq
updated 4.9 years ago by 68k • written 4.9 years ago by • 0
0
votes
0
replies
1.7k
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from raw reads ASV table - dada2 - small number of merged pairs
dada2 515F - 806Rd
5.9 years ago beginner87 • 0
0
votes
1
reply
2.4k
views
Error: record does not start with '@'
DADA2 .fq
updated 7.1 years ago by 68k • written 7.1 years ago by • 0
0
votes
1
reply
1.5k
views
Cannot Update Biostrings to Latest Version
dada2 biostrings
updated 7.5 years ago by 68k • written 7.5 years ago by • 0
4
votes
4
replies
3.3k
views
Using DADA2 output for DESeq2
deseq2 dada2
updated 7.9 years ago by ▴ 50 • written 7.9 years ago by ▴ 20
0
votes
1
reply
2.2k
views
dada2 unavailable for R 3.4.1
bioconductor R dada2
updated 8.5 years ago by ▴ 50 • written 8.5 years ago by • 0
1
vote
7
replies
21k
views
Dada2 and GenomeInfoDbData installation
dada2 GenomeInfoDbData
updated 8.6 years ago by • 0 • written 8.7 years ago by • 0
26 results • Page 1 of 1
Recent ...
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Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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