Showing : db0 • reset
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Spam: Ground Handling Companies in Maldives
alabaster.schemas db0
17 months ago vvipflight01 0
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Spam: GenOMICC DNA biobank
alabaster.schemas db0
17 months ago Jolka 0
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Join BOC Sciences at Drug Discovery Chemistry
alabaster.schemas db0
updated 6 weeks ago by • 0 • written 21 months ago by ▴ 10
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News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
2.2 years ago kayla.interdonato ▴ 160
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News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
2.7 years ago kayla.interdonato ▴ 160
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News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
3.2 years ago kayla.interdonato ▴ 160
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1.5k
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News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
3.7 years ago • updated 3.6 years ago kayla.interdonato ▴ 160
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News: Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation release db0
4.6 years ago kayla.interdonato ▴ 160
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1.5k
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News: Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
annotation db0 news release News
5.1 years ago kayla.interdonato ▴ 160
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1.1k
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News: Bioconductor 3.11 db0s are available
annotation db0 news release News
5.7 years ago kayla.interdonato ▴ 160
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News: Bioconductor 3.10 db0s are available
news release annotation db0 deadline News
6.2 years ago kayla.interdonato ▴ 160
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1.3k
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ka
Annotation db0 Annotation db0
12.2 years ago Guest User ★ 13k
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2.5k
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problem with makeOrgPackageFromNCBI (for Chinese hamster)
Annotation GO db0 PROcess Annotation GO db0 PROcess
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ★ 4.1k
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1.3k
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Add new affy organism platform
Microarray Annotation Organism cdf db0 probe annotate affy Microarray Annotation cdf
updated 12.6 years ago by ★ 7.2k • written 12.6 years ago by ▴ 50
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450K annotation: discrepancy between GEO GPL and Bioconductor annotation
Annotation db0 probe annotate PROcess GenomicFeatures GenomicRanges Annotation db0 probe
13.1 years ago Marc Carlson ★ 7.2k
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1.4k
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building an annotation library from scratch
miRNA Annotation Organism db0 AnnotationDbi microRNA miRNA Annotation Organism db0
updated 16.1 years ago by ★ 7.2k • written 16.1 years ago by ▴ 610
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building an annotation library from scratch
miRNA Annotation db0 AnnotationDbi miRNA Annotation db0 AnnotationDbi
16.1 years ago Guido Hooiveld ★ 4.1k
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2.4k
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GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation GO Yeast db0 probe topGO AnnotationDbi Annotation GO Yeast db0 probe topGO
updated 16.5 years ago by ★ 7.2k • written 16.5 years ago by ▴ 20
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hyperGTest, different Results using different annotation packages
Microarray Annotation GO ChipName db0 GOstats Category Microarray Annotation GO ChipName
16.7 years ago Wiebke Iffert ▴ 20
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1.5k
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memory corruption in make.cdf.package() reading binary CDF with BioC 2.3
cdf db0 cdf db0
updated 17.1 years ago by ★ 13k • written 17.1 years ago by ▴ 10
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1
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2.1k
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problem with AnnotationDbi
ChipName db0 affy Category AnnotationDbi ChipName db0 affy Category AnnotationDbi
updated 17.1 years ago by 16k • written 17.1 years ago by ▴ 830
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2
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1.7k
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GO over representation analysis
Annotation Pathways GO Organism db0 AnnBuilder PROcess maanova AnnotationDbi Annotation
updated 17.3 years ago by ▴ 220 • written 17.3 years ago by ★ 7.2k
22 results • Page 1 of 1
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
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Popular Question to James W. MacDonald 68k
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