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Spam:
Ground Handling Companies in Maldives
alabaster.schemas
db0
15 months ago
vvipflight01
0
0
votes
0
replies
41
views
Spam:
GenOMICC DNA biobank
alabaster.schemas
db0
16 months ago
Jolka
0
1
vote
1
reply
739
views
Join BOC Sciences at Drug Discovery Chemistry
alabaster.schemas
db0
updated 9 days ago by
teamardigen
• 0 • written 19 months ago by
bocsci11
▴ 10
1
vote
0
replies
1.6k
views
News:
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0
release
Annotation
2.1 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
1.3k
views
News:
Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release
db0
Annotation
2.6 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
1.3k
views
News:
Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release
db0
annotation
3.1 years ago
kayla.interdonato
▴ 160
0
votes
1
reply
1.5k
views
News:
Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation
release
db0
3.6 years ago • updated 3.5 years ago
kayla.interdonato
▴ 160
1
vote
0
replies
1.3k
views
News:
Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation
release
db0
4.5 years ago
kayla.interdonato
▴ 160
0
votes
1
reply
1.4k
views
News:
Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
annotation
db0
news
release
News
5.0 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
1.1k
views
News:
Bioconductor 3.11 db0s are available
annotation
db0
news
release
News
5.6 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
997
views
News:
Bioconductor 3.10 db0s are available
news
release
annotation
db0
deadline
News
6.1 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
1.3k
views
ka
Annotation
db0
Annotation
db0
12.1 years ago
Guest User
★ 13k
0
votes
2
replies
2.5k
views
problem with makeOrgPackageFromNCBI (for Chinese hamster)
Annotation
GO
db0
PROcess
Annotation
GO
db0
PROcess
updated 12.2 years ago by
Marc Carlson
★ 7.2k • written 12.2 years ago by
Guido Hooiveld
★ 4.1k
0
votes
1
reply
1.3k
views
Add new affy organism platform
Microarray
Annotation
Organism
cdf
db0
probe
annotate
affy
Microarray
Annotation
cdf
updated 12.5 years ago by
Marc Carlson
★ 7.2k • written 12.5 years ago by
Ekta Jain
▴ 50
0
votes
0
replies
1.8k
views
450K annotation: discrepancy between GEO GPL and Bioconductor annotation
Annotation
db0
probe
annotate
PROcess
GenomicFeatures
GenomicRanges
Annotation
db0
probe
13.0 years ago
Marc Carlson
★ 7.2k
0
votes
1
reply
1.4k
views
building an annotation library from scratch
miRNA
Annotation
Organism
db0
AnnotationDbi
microRNA
miRNA
Annotation
Organism
db0
updated 16.0 years ago by
Marc Carlson
★ 7.2k • written 16.0 years ago by
James F. Reid
▴ 610
0
votes
0
replies
1.4k
views
building an annotation library from scratch
miRNA
Annotation
db0
AnnotationDbi
miRNA
Annotation
db0
AnnotationDbi
16.0 years ago
Guido Hooiveld
★ 4.1k
0
votes
2
replies
2.4k
views
GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation
GO
Yeast
db0
probe
topGO
AnnotationDbi
Annotation
GO
Yeast
db0
probe
topGO
updated 16.4 years ago by
Marc Carlson
★ 7.2k • written 16.4 years ago by
Gaspard Lequeux
▴ 20
0
votes
0
replies
1.2k
views
hyperGTest, different Results using different annotation packages
Microarray
Annotation
GO
ChipName
db0
GOstats
Category
Microarray
Annotation
GO
ChipName
16.6 years ago
Wiebke Iffert
▴ 20
0
votes
1
reply
1.4k
views
memory corruption in make.cdf.package() reading binary CDF with BioC 2.3
cdf
db0
cdf
db0
updated 17.0 years ago by
Wolfgang Huber
★ 13k • written 17.0 years ago by
Don Maszle
▴ 10
0
votes
1
reply
2.0k
views
problem with AnnotationDbi
ChipName
db0
affy
Category
AnnotationDbi
ChipName
db0
affy
Category
AnnotationDbi
updated 17.0 years ago by
Hervé Pagès
16k • written 17.0 years ago by
Mark W Kimpel
▴ 830
0
votes
2
replies
1.7k
views
GO over representation analysis
Annotation
Pathways
GO
Organism
db0
AnnBuilder
PROcess
maanova
AnnotationDbi
Annotation
updated 17.2 years ago by
Kort, Eric
▴ 220 • written 17.2 years ago by
Marc Carlson
★ 7.2k
22 results • Page
1 of 1
Recent ...
Replies
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…
Votes
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
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