Showing : deconvolution • reset
0
votes
0
replies
765
views
Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution rnaseqGene RNAseq
18 months ago JG13 • 0
2
votes
2
replies
2.0k
views
How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
3.9 years ago Hasan Alanya • 0
0
votes
0
replies
1.5k
views
Best deconvolution method
Deconvolution
4.2 years ago Barista • 0
0
votes
1
reply
1.0k
views
PSEA deconvolution; some of the coefficient is NA?
PSEA Deconvolution
5.6 years ago kavator ▴ 30
0
votes
0
replies
1.4k
views
Deconvolution methods from WGBS data (methylation)
methylCC deconvolution methylation dmrseq serum
5.8 years ago marcin.bazyliszek • 0
0
votes
2
replies
1.2k
views
csSAMfit with covariates
limma microarray deconvolution cell type
updated 5.9 years ago by 53k • written 5.9 years ago by • 0
0
votes
4
replies
1.8k
views
varianceStabilizingTransformation for clustering, deconvolution
deseq2 deconvolution normalization limma
updated 7.0 years ago by 43k • written 7.0 years ago by ▴ 30
0
votes
0
replies
1.4k
views
Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution methods
8.0 years ago casey.rimland ▴ 170
1
vote
1
reply
1.5k
views
Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution rnaseq psea
8.0 years ago WouterDeCoster ▴ 130
1
vote
1
reply
3.6k
views
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution rna-seq
updated 10.3 years ago by ★ 13k • written 10.3 years ago by ▴ 160
0
votes
0
replies
2.0k
views
CellMix - Custom matrix with Abbas signature
deconvolution cellmix
10.6 years ago carleshf • 0
11 results • Page 1 of 1
Recent ...
Replies
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Awards • All
Popular Question to Stephanie M. Gogarten ▴ 890
Autobiographer to Frances Turner ▴ 20
Popular Question to maltethodberg ▴ 180
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Lluís Revilla Sancho ▴ 760
Locations • All
WEHI, Melbourne, Australia, 8 minutes ago
United Kingdom, 23 minutes ago
Melbourne, Australia, 23 minutes ago
United States, 33 minutes ago
United States, 1 hour ago
Traffic: 1028 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6