Showing : deconvolution • reset
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Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution rnaseqGene RNAseq
17 months ago JG13 • 0
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How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
3.8 years ago Hasan Alanya • 0
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Best deconvolution method
Deconvolution
4.1 years ago Barista • 0
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990
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PSEA deconvolution; some of the coefficient is NA?
PSEA Deconvolution
5.5 years ago kavator ▴ 30
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Deconvolution methods from WGBS data (methylation)
methylCC deconvolution methylation dmrseq serum
5.6 years ago marcin.bazyliszek • 0
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csSAMfit with covariates
limma microarray deconvolution cell type
updated 5.8 years ago by 53k • written 5.8 years ago by • 0
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4
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1.8k
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varianceStabilizingTransformation for clustering, deconvolution
deseq2 deconvolution normalization limma
updated 6.9 years ago by 43k • written 6.9 years ago by ▴ 30
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Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution methods
7.9 years ago casey.rimland ▴ 170
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Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution rnaseq psea
7.9 years ago WouterDeCoster ▴ 130
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Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution rna-seq
updated 10.2 years ago by ★ 13k • written 10.2 years ago by ▴ 160
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CellMix - Custom matrix with Abbas signature
deconvolution cellmix
10.5 years ago carleshf ▴ 10
11 results • Page 1 of 1
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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