Showing : deconvolution • reset
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Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution rnaseqGene RNAseq
19 months ago JG13 • 0
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2
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2.0k
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How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
4.0 years ago Hasan Alanya • 0
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1.5k
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Best deconvolution method
Deconvolution
4.2 years ago Barista • 0
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1
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1.0k
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PSEA deconvolution; some of the coefficient is NA?
PSEA Deconvolution
5.6 years ago kavator ▴ 30
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Deconvolution methods from WGBS data (methylation)
methylCC deconvolution methylation dmrseq serum
5.8 years ago marcin.bazyliszek • 0
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1.2k
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csSAMfit with covariates
limma microarray deconvolution cell type
updated 5.9 years ago by 53k • written 5.9 years ago by • 0
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4
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1.8k
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varianceStabilizingTransformation for clustering, deconvolution
deseq2 deconvolution normalization limma
updated 7.0 years ago by 43k • written 7.0 years ago by ▴ 30
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1.4k
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Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution methods
8.0 years ago casey.rimland ▴ 170
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1.5k
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Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution rnaseq psea
8.0 years ago WouterDeCoster ▴ 130
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3.6k
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Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution rna-seq
updated 10.3 years ago by ★ 13k • written 10.3 years ago by ▴ 160
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CellMix - Custom matrix with Abbas signature
deconvolution cellmix
10.6 years ago carleshf • 0
11 results • Page 1 of 1
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Comment: How to convert .raw data for use in xcms by TikTsossa33ssalpc • 0
It sounds like your mzML conversion has a CV term that XCMS doesn t recognize, which often happens with newer vendor formats or outdated ms…
Comment: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by TikTsossa33ssalpc • 0
To calculate event numbers for boolean combinations in flow cytometry, you should use a logic gating tool or a script that processes popula…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…
Comment: Combining two proteomics datasets with limpa by Andrew Pattison • 0
Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
Flagging protein groups as likely contaminants in this way will be fine for a limpa analysis. The `Cont_` proteins can optionally stay in f…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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