Bioconductor Dependencies

Showing : dependencies • reset

votes

replies

596

views

Install dependencies biocmanager

updated 4 weeks ago by shepherl 4.1k • written 5 weeks ago by jessica.gillespie • 0

vote

replies

1.2k

views

versions BiocVersion dependencies

updated 4.0 years ago by shepherl 4.1k • written 4.0 years ago by sohitmiglani • 0

votes

1.2k

views

R package dependencies

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by MAPK • 0

votes

1.3k

views

cran package development dependencies

updated 6.4 years ago by Peter Langfelder ★ 3.0k • written 6.4 years ago by bjgrant • 0

vote

1.0k

views

dependencies error

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by ericaugustoito • 0

vote

1.6k

views

package installation dependencies bagfootr bagfoot

updated 7.4 years ago by Sean Davis 21k • written 7.4 years ago by rbronste ▴ 60

vote

replies

2.6k

views

scde ubuntu dependencies R

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by aditya531996 • 0

votes

replies

2.5k

views

deseq2 ubuntu edger dependencies

8.1 years ago aditya531996 • 0

vote

replies

2.0k

views

rhdf5 hdf5 dependencies

updated 8.7 years ago by Mike Smith ★ 6.6k • written 8.7 years ago by thabermann • 0

votes

replies

6.8k

views

parathyroidse package installation dependencies

updated 8.8 years ago by Hervé Pagès 16k • written 8.8 years ago by mmalek • 0

votes

3.0k

views

annotationhub dependencies

9.3 years ago dalloliogm ▴ 50

11 results • Page 1 of 1

Recent ...

Replies

Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

Awards • All

Popular Question to Dario Strbenac ★ 1.6k