Bioconductor Dependencies

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versions BiocVersion dependencies

updated 3.7 years ago by shepherl 4.1k • written 3.7 years ago by sohitmiglani • 0

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R package dependencies

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by MAPK • 0

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cran package development dependencies

updated 6.1 years ago by Peter Langfelder ★ 3.0k • written 6.1 years ago by bjgrant • 0

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dependencies error

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by ericaugustoito • 0

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package installation dependencies bagfootr bagfoot

updated 7.1 years ago by Sean Davis 21k • written 7.1 years ago by rbronste ▴ 60

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scde ubuntu dependencies R

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by aditya531996 • 0

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deseq2 ubuntu edger dependencies

7.8 years ago aditya531996 • 0

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rhdf5 hdf5 dependencies

updated 8.4 years ago by Mike Smith ★ 6.6k • written 8.4 years ago by thabermann • 0

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parathyroidse package installation dependencies

updated 8.4 years ago by Hervé Pagès 16k • written 8.4 years ago by mmalek • 0

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2.9k

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annotationhub dependencies

8.9 years ago dalloliogm ▴ 50

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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

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A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

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