Bioconductor Dependencies

Showing : dependencies • reset

vote

replies

963

views

versions BiocVersion dependencies

updated 3.2 years ago by shepherl 3.9k • written 3.3 years ago by sohitmiglani • 0

votes

944

views

R package dependencies

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by MAPK • 0

votes

1.1k

views

cran package development dependencies

updated 5.6 years ago by Peter Langfelder ★ 3.0k • written 5.6 years ago by bjgrant • 0

vote

872

views

dependencies error

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by ericaugustoito • 0

vote

1.3k

views

package installation dependencies bagfootr bagfoot

updated 6.7 years ago by Sean Davis 21k • written 6.7 years ago by rbronste ▴ 60

vote

replies

2.3k

views

scde ubuntu dependencies R

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by aditya531996 • 0

votes

replies

2.3k

views

deseq2 ubuntu edger dependencies

7.3 years ago aditya531996 • 0

vote

replies

1.7k

views

rhdf5 hdf5 dependencies

updated 8.0 years ago by Mike Smith ★ 6.5k • written 8.0 years ago by thabermann • 0

votes

replies

6.1k

views

parathyroidse package installation dependencies

updated 8.0 years ago by Hervé Pagès 16k • written 8.0 years ago by mmalek • 0

votes

2.7k

views

annotationhub dependencies

8.5 years ago dalloliogm ▴ 50

10 results • Page 1 of 1

Recent ...

Replies

Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k

You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.

Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0

In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…

Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k

For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…

Votes

Comment: Most enriched pathway is not expressed when modifying universe parameter

Time-course, comparison of two groups

Answer: Behaviour of featureCounts when quantifying multi-mapping reads

Answer: GESA with certain gene list returns no result with human genom, but many result

Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`

Awards • All