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Showing :
dispersion
•
reset
2
votes
2
replies
706
views
DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2
medianofratiostransformation
StatisticalMethod
Normalization
dispersion
4 months ago
Linton
• 0
0
votes
3
replies
759
views
Dispersion outliers genes
Dispersion
DESeq2
12 months ago
raya.fai
▴ 60
1
vote
1
reply
910
views
Dispersion estimates with DESeq2
dispersionestimates
dispersion
DESeq2
estimates
deseq2
updated 21 months ago by
Michael Love
42k • written 21 months ago by
Julia
▴ 10
1
vote
2
replies
1.2k
views
Design formula in DESeq2
groups
dispersion
DESeq2
desing
2.4 years ago
m.glymenaki
• 0
4
votes
5
replies
1.2k
views
No counts, just fold change data
EdgeR
Estimation
Dispersion
2.9 years ago
Manal
• 0
0
votes
0
replies
561
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 3.1 years ago by
Michael Love
42k • written 3.1 years ago by
catalina.gonzalez-gomez
• 0
3
votes
6
replies
2.9k
views
DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.
Dispersion
RNA-seq
DESeq2
Multiple-group
updated 3.2 years ago by
Michael Love
42k • written 3.5 years ago by
Kelen
▴ 10
0
votes
2
replies
826
views
Normalization and dispersion estimates in timeseries data with highly variable read numbers
EdgeR
dispersion
normalization
updated 4.2 years ago by
Gordon Smyth
50k • written 4.2 years ago by
Ruben.wauters
• 0
0
votes
6
replies
1.6k
views
DEXSeq dispersion outlier
DEXSeq
dispersion
pvalue
5.0 years ago
fiona.dick91
▴ 60
0
votes
5
replies
2.5k
views
Dispersion calculation by DESeq2
DESeq2
dispersion
5.3 years ago
eva-m.petit
• 0
0
votes
4
replies
1.4k
views
DESeq2 for analyzing differential expression based on dispersion across samples within groups, instead of based on expression means.
deseq2
dispersion
updated 5.3 years ago by
Michael Love
42k • written 5.3 years ago by
emilio.marmol
• 0
3
votes
3
replies
1.9k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 4.9 years ago by
onlychainsaw2019
• 0 • written 5.3 years ago by
ilovesuperheroes1993
• 0
3
votes
3
replies
1.3k
views
DESseq2: Why can the dispersion be generelized over the conditions?
deseq2
dispersion
estimatedispersions
updated 5.9 years ago by
Ryan C. Thompson
★ 7.9k • written 5.9 years ago by
Mr.RB
▴ 20
8
votes
12
replies
8.9k
views
EdgeR: Explaning dispersion types to newbies
edger
dispersion
estimatedispersions
visualization
teaching
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
Mr.RB
▴ 20
0
votes
13
replies
5.6k
views
DESeq2: Poor dispersion fit, even when a local or custom fit is used
deseq2
dispersion
6.1 years ago
Frederik Ziebell
▴ 20
0
votes
11
replies
2.2k
views
Strange dispersion plot
deseq2
dispersion
6.2 years ago
Moose123
• 0
5
votes
7
replies
6.8k
views
DESeq2 dispersion and p-value histograms
deseq2
rnaseq
fdrtool
dispersion
updated 6.5 years ago by
Bernd Klaus
▴ 610 • written 6.6 years ago by
rrcutler
▴ 70
1
vote
2
replies
1.0k
views
2-Factor Experiment in edgeR, Effect of no reps in one set and two reps in others
rnaseq
edger
differential expression
dispersion
updated 7.6 years ago by
Ryan C. Thompson
★ 7.9k • written 7.6 years ago by
nancyjwahl7
• 0
4
votes
3
replies
1.6k
views
How to get dispersion values for DESeq2
deseq2
dispersion
R
updated 7.9 years ago by
Michael Love
42k • written 7.9 years ago by
hiraksarkar.cs
▴ 10
1
vote
2
replies
1.4k
views
Common dispersion from estimateGLMRobustDisp()
edgeR
dispersion
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
Jane Merlevede
▴ 90
1
vote
3
replies
2.2k
views
Error Estimating the NB Dispersion of a Dataset
dispersion
edgeR
updated 7.9 years ago by
Gordon Smyth
50k • written 7.9 years ago by
humberto_munoz
• 0
0
votes
1
reply
1.3k
views
How do I turn off dispersion in DESeq2?
deseq2
dispersion
updated 8.3 years ago by
Michael Love
42k • written 8.3 years ago by
hans
• 0
3
votes
2
replies
4.0k
views
DESeq2 with high dispersions
deseq2
dispersion
low counts
8.8 years ago
meeta.mistry
▴ 30
23 results • Page
1 of 1
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Replies
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Comment: European Bioconductor Conference 2023 planning
by
angelaesper43
• 0
@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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Ken C
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Johannes Rainer
★ 2.0k
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Chris
▴ 10
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Guido Hooiveld
★ 4.0k
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Michael Love
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