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Showing :
dispersion
•
reset
8
votes
12
replies
8.7k
views
EdgeR: Explaning dispersion types to newbies
edger
dispersion
estimatedispersions
visualization
teaching
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
Mr.RB
▴ 20
5
votes
7
replies
6.8k
views
DESeq2 dispersion and p-value histograms
deseq2
rnaseq
fdrtool
dispersion
updated 6.5 years ago by
Bernd Klaus
▴ 610 • written 6.5 years ago by
rrcutler
▴ 70
0
votes
13
replies
5.5k
views
DESeq2: Poor dispersion fit, even when a local or custom fit is used
deseq2
dispersion
6.0 years ago
Frederik Ziebell
▴ 20
3
votes
2
replies
4.0k
views
DESeq2 with high dispersions
deseq2
dispersion
low counts
8.8 years ago
meeta.mistry
▴ 30
3
votes
6
replies
2.9k
views
DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.
Dispersion
RNA-seq
DESeq2
Multiple-group
updated 3.2 years ago by
Michael Love
41k • written 3.5 years ago by
Kelen
▴ 10
0
votes
5
replies
2.5k
views
Dispersion calculation by DESeq2
DESeq2
dispersion
5.3 years ago
eva-m.petit
• 0
0
votes
11
replies
2.2k
views
Strange dispersion plot
deseq2
dispersion
6.2 years ago
Moose123
• 0
1
vote
3
replies
2.1k
views
Error Estimating the NB Dispersion of a Dataset
dispersion
edgeR
updated 7.9 years ago by
Gordon Smyth
50k • written 7.9 years ago by
humberto_munoz
• 0
3
votes
3
replies
1.8k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 4.8 years ago by
onlychainsaw2019
• 0 • written 5.3 years ago by
ilovesuperheroes1993
• 0
0
votes
6
replies
1.6k
views
DEXSeq dispersion outlier
DEXSeq
dispersion
pvalue
5.0 years ago
fiona.dick91
▴ 60
4
votes
3
replies
1.6k
views
How to get dispersion values for DESeq2
deseq2
dispersion
R
updated 7.9 years ago by
Michael Love
41k • written 7.9 years ago by
hiraksarkar.cs
▴ 10
0
votes
4
replies
1.4k
views
DESeq2 for analyzing differential expression based on dispersion across samples within groups, instead of based on expression means.
deseq2
dispersion
updated 5.3 years ago by
Michael Love
41k • written 5.3 years ago by
emilio.marmol
• 0
1
vote
2
replies
1.4k
views
Common dispersion from estimateGLMRobustDisp()
edgeR
dispersion
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
Jane Merlevede
▴ 90
0
votes
1
reply
1.3k
views
How do I turn off dispersion in DESeq2?
deseq2
dispersion
updated 8.2 years ago by
Michael Love
41k • written 8.2 years ago by
hans
• 0
3
votes
3
replies
1.2k
views
DESseq2: Why can the dispersion be generelized over the conditions?
deseq2
dispersion
estimatedispersions
updated 5.9 years ago by
Ryan C. Thompson
★ 7.9k • written 5.9 years ago by
Mr.RB
▴ 20
1
vote
2
replies
1.2k
views
Design formula in DESeq2
groups
dispersion
DESeq2
desing
2.4 years ago
m.glymenaki
• 0
4
votes
5
replies
1.2k
views
No counts, just fold change data
EdgeR
Estimation
Dispersion
2.9 years ago
Manal
• 0
1
vote
2
replies
1.0k
views
2-Factor Experiment in edgeR, Effect of no reps in one set and two reps in others
rnaseq
edger
differential expression
dispersion
updated 7.5 years ago by
Ryan C. Thompson
★ 7.9k • written 7.5 years ago by
nancyjwahl7
• 0
1
vote
1
reply
899
views
Dispersion estimates with DESeq2
dispersionestimates
dispersion
DESeq2
estimates
deseq2
updated 21 months ago by
Michael Love
41k • written 21 months ago by
Julia
▴ 10
0
votes
2
replies
814
views
Normalization and dispersion estimates in timeseries data with highly variable read numbers
EdgeR
dispersion
normalization
updated 4.2 years ago by
Gordon Smyth
50k • written 4.2 years ago by
Ruben.wauters
• 0
0
votes
3
replies
739
views
Dispersion outliers genes
Dispersion
DESeq2
11 months ago
raya.fai
▴ 60
2
votes
2
replies
622
views
DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2
medianofratiostransformation
StatisticalMethod
Normalization
dispersion
3 months ago
Linton
• 0
0
votes
0
replies
554
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 3.0 years ago by
Michael Love
41k • written 3.1 years ago by
catalina.gonzalez-gomez
• 0
23 results • Page
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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