Bioconductor Dna

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DNA minfiData minfiDataEPIC DNAMethylation minfi

7 months ago user_bioinfo • 0

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1.0k

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DNA repeats

2.7 years ago me-nobody • 0

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1.3k

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 3.9 years ago by James W. MacDonald 68k • written 3.9 years ago by HELEN • 0

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1.5k

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software codon usage bias dna

updated 5.8 years ago by anamaria ▴ 10 • written 5.9 years ago by jol.espinoz ▴ 40

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891

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DNA alphabet

updated 6.6 years ago by James W. MacDonald 68k • written 6.6 years ago by fjia304 • 0

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2.4k

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decipher DNA biostrings

updated 7.8 years ago by Erik Wright ▴ 150 • written 7.8 years ago by reubenmcgregor88 • 0

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3.2k

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biostrings mask repeatmasker DNA

updated 4.7 years ago by ivantsers • 0 • written 7.9 years ago by beausoleilmo • 0

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1.8k

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ABI sequence DNA melting curve

updated 10.3 years ago by Hervé Pagès 16k • written 10.3 years ago by Prasanth ▴ 20

8 results • Page 1 of 1

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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