Bioconductor Dna

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DNA minfiData minfiDataEPIC DNAMethylation minfi

11 months ago user_bioinfo • 0

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1.1k

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DNA repeats

3.0 years ago me-nobody • 0

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1.4k

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 4.2 years ago by James W. MacDonald 68k • written 4.2 years ago by HELEN • 0

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software codon usage bias dna

updated 6.1 years ago by anamaria ▴ 10 • written 6.1 years ago by jol.espinoz ▴ 40

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971

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DNA alphabet

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by fjia304 • 0

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decipher DNA biostrings

updated 8.1 years ago by Erik Wright ▴ 150 • written 8.1 years ago by reubenmcgregor88 • 0

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biostrings mask repeatmasker DNA

updated 5.0 years ago by ivantsers • 0 • written 8.2 years ago by beausoleilmo • 0

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1.9k

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ABI sequence DNA melting curve

updated 10.6 years ago by Hervé Pagès 16k • written 10.6 years ago by Prasanth ▴ 20

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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

Answer: limpa analysis advice by Gordon Smyth 53k

It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…

Answer: When to use edgeR or limma by Gordon Smyth 53k

The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

I updated the above answer today.

Answer: When to use edgeR or limma by James W. MacDonald 68k

I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…

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Answer: When to use edgeR or limma

A: deseq2 - paired samples in 2 sequencing types with very different library sizes

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Popular Question to Lluís Revilla Sancho ▴ 760