Showing : dplyr • reset
9
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21
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15k
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ah <- AnnotationHub() Error in UseMethod("filter_"): no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tb…
AnnotationHub dplyr
updated 21 months ago by ▴ 10 • written 3.5 years ago by ▴ 40
2
votes
2
replies
438
views
Remove duplicates of colData in TreeSummarizedExperiment
dplyr TreeSummarizedExperiment
updated 7 months ago by 41k • written 7 months ago by • 0
3
votes
5
replies
18k
views
Any quick solution for fixing error : "$ operator is invalid for atomic vectors" ?
r granges dplyr error handling
updated 7.6 years ago by ★ 6.5k • written 7.6 years ago by ▴ 80
8
votes
4
replies
6.6k
views
Error UseMethod ("select_"): from bioconductor dplyr select package
bioconductor dplyr select
updated 6.5 years ago by 25k • written 6.5 years ago by ▴ 10
8
votes
4
replies
1.3k
views
Tidyverse can be a bit tidiest to work with....
dplyr tidyr
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 30
4
votes
1
reply
1.3k
views
Parallel Join Excessively Slow
biocparallel curatedmetagenomicdata parallel dplyr
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 240
0
votes
4
replies
1.7k
views
Unexpected behaviour of set operations on GRanges objects when dplyr is loaded
GenomicRanges S4Vectors dplyr
updated 5.3 years ago by 65k • written 5.3 years ago by ▴ 140
0
votes
3
replies
1.4k
views
Error in ImportRData
dplyr IsoformSwitchAnalyzeR
written 12 months ago by • 0
0
votes
2
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1.9k
views
Error in print.header("GDCquery: Searching in GDC database", "section") :could not find function "print.header",
tcgabiolinks dplyr DT
5.6 years ago Mithil Gaikwad • 0
8
votes
2
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3.0k
views
exprs function - clash with dplyr
exprs dplyr Biobase
6.0 years ago Wolfgang Huber ★ 13k
3
votes
0
replies
3.8k
views
Tutorial: dplyr and the GEOmetadb package for mining NCBI GEO metadata
geometadb dplyr Tutorial
8.9 years ago Sean Davis 21k
11 results • Page 1 of 1
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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