Bioconductor Dss

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474

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dss DSS

updated 10 months ago by James W. MacDonald 67k • written 10 months ago by chuanjiao6 • 0

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replies

801

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DSS

20 months ago Weisheng • 0

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1.2k

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DSS DMRcaller

updated 19 months ago by Noelia • 0 • written 2.4 years ago by Claire • 0

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3.2k

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methylationArrayAnalysis ChAMP DMP DSS

updated 2.2 years ago by James W. MacDonald 67k • written 2.6 years ago by 16301050225 • 0

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1.5k

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methylationArrayAnalysis illuminaio beadarray DSS bsseqData

2.9 years ago Jojo • 0

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868

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DSS

3.3 years ago cer.chloe ▴ 30

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1.3k

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DSS

4.1 years ago vi.hammer • 0

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934

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DSS BSSeq

4.7 years ago stephanie.rialle • 0

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1.1k

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DSS bug troubleshooting callDMR

5.0 years ago matthew.kearney • 0

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931

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DSS DSS-single bsseq

updated 5.2 years ago by James W. MacDonald 67k • written 5.2 years ago by varunorama • 0

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900

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DSS methylation

5.3 years ago CalM • 0

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1.6k

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dmrseq sva DSS

updated 5.5 years ago by keegan ▴ 60 • written 5.5 years ago by gjl ▴ 10

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1.4k

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DSS dmltest bayesian statistics methylation

6.7 years ago floriandeckert ▴ 30

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1.0k

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DSS DMLtest

6.8 years ago floriandeckert ▴ 30

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1.6k

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DSS WGBS coverage

updated 7 months ago by j.gilbert • 0 • written 7.2 years ago by floriandeckert ▴ 30

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1.2k

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DSS

8.4 years ago aerval • 0

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2.3k

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dss

8.7 years ago kafkaskid ▴ 20

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2.4k

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DSS bsseq summarizedexperiment

9.3 years ago Tim Peters ▴ 200

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1.6k

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limma DSS limma DSS

updated 10.8 years ago by James W. MacDonald 67k • written 10.8 years ago by Sabet, Julia A ▴ 180

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1.8k

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RNASeq Cancer edgeR DSS RNASeq Cancer edgeR DSS

updated 11.8 years ago by Ryan C. Thompson ★ 7.9k • written 11.8 years ago by Richard Friedman ★ 2.0k

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1.8k

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DSS DSS

updated 13.8 years ago by Ina Hoeschele ▴ 620 • written 13.8 years ago by Prasad Siddavatam ▴ 150

21 results • Page 1 of 1

Recent ...

Replies

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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