Showing : dss • reset
0
votes
1
reply
313
views
TheProcess got Killed
DSS
updated 7 months ago by 68k • written 7 months ago by • 0
1
vote
1
reply
673
views
Question about correction of confounders for EWAS
dss DSS
updated 20 months ago by 68k • written 20 months ago by • 0
0
votes
0
replies
1.0k
views
Confusing DSS outputs with smoothing (DMLtest)
DSS
2.5 years ago Weisheng • 0
0
votes
1
reply
1.4k
views
DMRfinder findDMRs.r Error - Argument is of length zero
DSS DMRcaller
updated 2.4 years ago by • 0 • written 3.2 years ago by • 0
0
votes
7
replies
3.8k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 3.0 years ago by 68k • written 3.4 years ago by • 0
2
votes
4
replies
1.9k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis illuminaio beadarray DSS bsseqData
3.7 years ago Jojo • 0
3
votes
0
replies
1.0k
views
DSS : Different results between DMLtest and DMLtest.multifactor
DSS
4.1 years ago cer.chloe ▴ 30
1
vote
2
replies
1.5k
views
BUG: `showOneDMR` from DSS package creates wrong axis labels
DSS
4.9 years ago vi.hammer • 0
0
votes
0
replies
1.1k
views
DSS smoothing RRBS and strand collapse
DSS BSSeq
5.5 years ago stephanie.rialle • 0
0
votes
0
replies
1.2k
views
[DSS] callDMR - dis.merge option does not seem to be working
DSS bug troubleshooting callDMR
5.9 years ago matthew.kearney • 0
0
votes
1
reply
1.1k
views
Varying results from DSS when specifying different BSobj
DSS DSS-single bsseq
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
0
votes
0
replies
1.1k
views
DSS for non-CpG site analysis
DSS methylation
6.1 years ago CalM • 0
1
vote
1
reply
2.0k
views
Using surrogate variables as covariates in WGBS differential methylation calling
dmrseq sva DSS
updated 6.3 years ago by ▴ 60 • written 6.3 years ago by ▴ 10
0
votes
0
replies
1.6k
views
DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
7.5 years ago floriandeckert ▴ 30
0
votes
0
replies
1.2k
views
DSS DMLtest Object features
DSS DMLtest
7.6 years ago floriandeckert ▴ 30
0
votes
1
reply
1.9k
views
DSS CpG coverage threshold
DSS WGBS coverage
updated 17 months ago by • 0 • written 8.0 years ago by ▴ 30
0
votes
1
reply
1.4k
views
DSS DMLtest with different group sizes
DSS
9.2 years ago aerval • 0
2
votes
4
replies
2.5k
views
Error: could not find function "DMLtest"
dss
9.5 years ago kafkaskid ▴ 20
0
votes
2
replies
2.6k
views
Issue with SummarizedExperiment thru DSS::makeBSseqData
DSS bsseq summarizedexperiment
10.1 years ago Tim Peters ▴ 230
0
votes
1
reply
1.7k
views
limma design matrix missing a Date column
limma DSS limma DSS
updated 11.6 years ago by 68k • written 11.6 years ago by ▴ 180
0
votes
3
replies
2.0k
views
QuasiSeq vs DSS
RNASeq Cancer edgeR DSS RNASeq Cancer edgeR DSS
updated 12.6 years ago by ★ 7.9k • written 12.6 years ago by ★ 2.0k
0
votes
6
replies
2.0k
views
limma complex contrast matrix
DSS DSS
updated 14.6 years ago by ▴ 620 • written 14.6 years ago by ▴ 150
22 results • Page 1 of 1
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Awards • All
Popular Question to Peter • 0
Popular Question to Travis • 0
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Locations • All
WEHI, Melbourne, Australia, 49 minutes ago
The city by the bay, 50 minutes ago
United States, 2 hours ago
United States, 5 hours ago
United States, 5 hours ago
Traffic: 579 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6