Showing : dss • reset
0
votes
1
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180
views
TheProcess got Killed
DSS
updated 5 weeks ago by 68k • written 5 weeks ago by • 0
1
vote
1
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563
views
Question about correction of confounders for EWAS
dss DSS
updated 14 months ago by 68k • written 14 months ago by • 0
0
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0
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906
views
Confusing DSS outputs with smoothing (DMLtest)
DSS
2.0 years ago Weisheng • 0
0
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1
reply
1.3k
views
DMRfinder findDMRs.r Error - Argument is of length zero
DSS DMRcaller
updated 23 months ago by • 0 • written 2.7 years ago by • 0
0
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7
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3.5k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 2.4 years ago by 68k • written 2.9 years ago by • 0
2
votes
4
replies
1.7k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis illuminaio beadarray DSS bsseqData
3.2 years ago Jojo • 0
3
votes
0
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917
views
DSS : Different results between DMLtest and DMLtest.multifactor
DSS
3.6 years ago cer.chloe ▴ 30
1
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2
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1.3k
views
BUG: `showOneDMR` from DSS package creates wrong axis labels
DSS
4.4 years ago • updated 4.3 years ago vi.hammer • 0
0
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0
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1.0k
views
DSS smoothing RRBS and strand collapse
DSS BSSeq
5.0 years ago stephanie.rialle • 0
0
votes
0
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1.1k
views
[DSS] callDMR - dis.merge option does not seem to be working
DSS bug troubleshooting callDMR
5.3 years ago matthew.kearney • 0
0
votes
1
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1.0k
views
Varying results from DSS when specifying different BSobj
DSS DSS-single bsseq
updated 5.5 years ago by 68k • written 5.5 years ago by • 0
0
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0
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978
views
DSS for non-CpG site analysis
DSS methylation
5.6 years ago CalM • 0
1
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1
reply
1.8k
views
Using surrogate variables as covariates in WGBS differential methylation calling
dmrseq sva DSS
updated 5.8 years ago by ▴ 60 • written 5.8 years ago by ▴ 10
0
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0
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1.5k
views
DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
7.0 years ago floriandeckert ▴ 30
0
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0
replies
1.1k
views
DSS DMLtest Object features
DSS DMLtest
7.1 years ago floriandeckert ▴ 30
0
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1
reply
1.7k
views
DSS CpG coverage threshold
DSS WGBS coverage
updated 11 months ago by • 0 • written 7.5 years ago by ▴ 30
0
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1
reply
1.3k
views
DSS DMLtest with different group sizes
DSS
8.6 years ago aerval • 0
2
votes
4
replies
2.4k
views
Error: could not find function "DMLtest"
dss
9.0 years ago kafkaskid ▴ 20
0
votes
2
replies
2.5k
views
Issue with SummarizedExperiment thru DSS::makeBSseqData
DSS bsseq summarizedexperiment
9.6 years ago Tim Peters ▴ 230
0
votes
1
reply
1.6k
views
limma design matrix missing a Date column
limma DSS limma DSS
updated 11.1 years ago by 68k • written 11.1 years ago by ▴ 180
0
votes
3
replies
1.9k
views
QuasiSeq vs DSS
RNASeq Cancer edgeR DSS RNASeq Cancer edgeR DSS
updated 12.1 years ago by ★ 7.9k • written 12.1 years ago by ★ 2.0k
0
votes
6
replies
1.9k
views
limma complex contrast matrix
DSS DSS
updated 14.0 years ago by ▴ 620 • written 14.0 years ago by ▴ 150
22 results • Page 1 of 1
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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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