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dss
•
reset
3
votes
0
replies
714
views
DSS : Different results between DMLtest and DMLtest.multifactor
DSS
2.7 years ago
cer.chloe
▴ 30
2
votes
4
replies
2.1k
views
Error: could not find function "DMLtest"
dss
8.1 years ago
kafkaskid
▴ 20
2
votes
4
replies
1.3k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis
illuminaio
beadarray
DSS
bsseqData
2.3 years ago
Jojo
• 0
1
vote
1
reply
1.3k
views
Using surrogate variables as covariates in WGBS differential methylation calling
dmrseq
sva
DSS
updated 4.9 years ago by
keegan
▴ 60 • written 4.9 years ago by
gjl
▴ 10
1
vote
2
replies
1.1k
views
BUG: `showOneDMR` from DSS package creates wrong axis labels
DSS
3.5 years ago
vi.hammer
• 0
1
vote
1
reply
260
views
Question about correction of confounders for EWAS
dss
DSS
updated 3 months ago by
James W. MacDonald
65k • written 3 months ago by
chuanjiao6
• 0
0
votes
0
replies
890
views
DSS DMLtest Object features
DSS
DMLtest
6.2 years ago
floriandeckert
▴ 30
0
votes
0
replies
1.2k
views
DSS DMLTest Prior Estimate of theta dispersion
DSS
dmltest
bayesian
statistics
methylation
6.1 years ago
floriandeckert
▴ 30
0
votes
6
replies
1.6k
views
limma complex contrast matrix
DSS
DSS
updated 13.2 years ago by
Ina Hoeschele
▴ 620 • written 13.2 years ago by
Prasad Siddavatam
▴ 150
0
votes
1
reply
733
views
Varying results from DSS when specifying different BSobj
DSS
DSS-single
bsseq
updated 4.6 years ago by
James W. MacDonald
65k • written 4.6 years ago by
varunorama
• 0
0
votes
0
replies
892
views
[DSS] callDMR - dis.merge option does not seem to be working
DSS
bug
troubleshooting
callDMR
4.5 years ago
matthew.kearney
• 0
0
votes
0
replies
746
views
DSS smoothing RRBS and strand collapse
DSS
BSSeq
4.1 years ago
stephanie.rialle
• 0
0
votes
7
replies
2.7k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis
ChAMP
DMP
DSS
updated 18 months ago by
James W. MacDonald
65k • written 2.0 years ago by
16301050225
• 0
0
votes
1
reply
976
views
DMRfinder findDMRs.r Error - Argument is of length zero
DSS
DMRcaller
updated 12 months ago by
Noelia
• 0 • written 21 months ago by
Claire
• 0
0
votes
0
replies
515
views
Confusing DSS outputs with smoothing (DMLtest)
DSS
13 months ago
Weisheng
• 0
0
votes
0
replies
736
views
DSS for non-CpG site analysis
DSS
methylation
4.7 years ago
CalM
• 0
0
votes
3
replies
1.7k
views
QuasiSeq vs DSS
RNASeq
Cancer
edgeR
DSS
RNASeq
Cancer
edgeR
DSS
updated 11.2 years ago by
Ryan C. Thompson
★ 7.9k • written 11.2 years ago by
Richard Friedman
★ 2.0k
0
votes
1
reply
1.4k
views
limma design matrix missing a Date column
limma
DSS
limma
DSS
updated 10.2 years ago by
James W. MacDonald
65k • written 10.2 years ago by
Sabet, Julia A
▴ 180
0
votes
2
replies
2.1k
views
Issue with SummarizedExperiment thru DSS::makeBSseqData
DSS
bsseq
summarizedexperiment
8.7 years ago
Tim Peters
▴ 180
0
votes
1
reply
1.1k
views
DSS DMLtest with different group sizes
DSS
7.8 years ago
aerval
• 0
0
votes
1
reply
1.3k
views
DSS CpG coverage threshold
DSS
WGBS
coverage
updated 7 days ago by
j.gilbert
• 0 • written 6.6 years ago by
floriandeckert
▴ 30
21 results • Page
1 of 1
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Replies
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
Matthew Thornton
▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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