Showing : edgeR • reset
8
votes
3
replies
19k
views
edgeR normalization method
edgeR differential expression normalization
updated 9.7 years ago by ★ 29k • written 9.7 years ago by ▴ 20
5
votes
3
replies
5.0k
views
edgeR - how to convert DGELRT and other classes to .csv files
edgeR differential expression file conversion
updated 3.5 years ago by • 0 • written 9.7 years ago by ▴ 10
0
votes
2
replies
1.1k
views
Anyone see whats causing EdgeR to report Design matrix not of full rank.?
edger design matrix
9.7 years ago nickschurch • 0
20
votes
10
replies
8.8k
views
Correct sequence of functions for edgeR, edgeR robust and edgeR QL.
edger estimatedispersions glm
updated 9.7 years ago by 53k • written 9.7 years ago by ▴ 180
3
votes
4
replies
1.5k
views
bounded trended dispersion edgeR
edger
updated 9.7 years ago by ★ 29k • written 9.7 years ago by ▴ 180
2
votes
2
replies
2.3k
views
Normalization in edgeR
edger rnaseq bioconductor
updated 9.7 years ago by 53k • written 9.7 years ago by • 0
0
votes
1
reply
2.4k
views
EdgeR: Each treatment as a group versus treatment effects over all times?
edgeR limma
updated 9.7 years ago by ★ 29k • written 9.7 years ago by ▴ 80
4
votes
10
replies
3.3k
views
Effects of continuous variable with adjustment for gender
edger limma voom
updated 9.7 years ago by 53k • written 9.7 years ago by ▴ 10
5
votes
9
replies
2.5k
views
Paired samples, two time points, two groups and adjust for a continuous variable in edgeR
edger limma
updated 9.7 years ago by 53k • written 9.7 years ago by ▴ 70
4
votes
2
replies
6.1k
views
How to run the rpkm function of edgeR
edger rpkm
updated 9.7 years ago by ★ 29k • written 9.7 years ago by ▴ 20
2
votes
10
replies
2.7k
views
Design matrix for unbalanced data
edgeR RNA-Seq design matrix multifactorial design
9.7 years ago Yogender Gowtham ▴ 20
2
votes
4
replies
1.9k
views
Complex ANOVA analysis in EdgeR
edger anova sequencing
updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
2
votes
1
reply
1.6k
views
Does order of removeBatchEffect() and DE subsetting matter for clustered heat map visualization?
rna-seq edgeR limma removebatcheffect() batch
updated 9.7 years ago by ★ 29k • written 9.7 years ago by ▴ 80
7
votes
21
replies
5.1k
views
ANOVA using edgeR
edger
9.8 years ago myprogramming2016 • 0
4
votes
7
replies
5.4k
views
the design matrix in edgeR users Guide
edgeR
9.8 years ago yifan.mo • 0
9
votes
5
replies
6.4k
views
Differential expression analysis: Permutation Test
deseq2 limma edger permutation
updated 24 months ago by 53k • written 9.8 years ago by ▴ 90
1
vote
1
reply
2.8k
views
edgeR GLM fitted values
edgeR GLM classification rnaseq
updated 9.8 years ago by ★ 29k • written 9.8 years ago by ▴ 10
0
votes
4
replies
5.6k
views
summaries featureCounts output for egeR
featurecounts edger
updated 9.8 years ago by ★ 3.6k • written 9.8 years ago by • 0
0
votes
3
replies
1.4k
views
EdgeR: retrieve Log-Likelihood from glmFit
edger bic mode selection
9.8 years ago cedric.gobet • 0
4
votes
5
replies
3.3k
views
Removing unwanted variation (RUV) for paired analysis ?
ruvseq edger ruvg removebatcheffect
updated 9.8 years ago by ★ 29k • written 9.8 years ago by ▴ 10
1
vote
2
replies
2.4k
views
read-count normalization and mRNA degradation in Deseq2 and EdgeR
deseq2 edger
updated 9.8 years ago by 43k • written 9.8 years ago by ▴ 140
4
votes
3
replies
1.4k
views
EdgeR: is more than one control per batch an issue?
edgeR batch effect
updated 9.8 years ago by ★ 29k • written 9.8 years ago by ▴ 80
1
vote
2
replies
1.4k
views
EdgeR GLM following voom conversion of counts
limma voom edger rnaseq
updated 9.8 years ago by ★ 7.9k • written 9.8 years ago by • 0
4
votes
4
replies
2.1k
views
Is this design matrix correct (treament factor with three levels)?
edger limma design matrix
9.8 years ago Ekarl2 ▴ 80
2
votes
2
replies
1.9k
views
Paired analysis and batch effects ?
ruvseq sva edger
updated 9.8 years ago by ★ 7.9k • written 9.8 years ago by ▴ 10
4
votes
2
replies
3.3k
views
ABOUT CPM FILTERING IN EDGER
edger
updated 9.8 years ago by ★ 29k • written 9.8 years ago by ▴ 40
8
votes
4
replies
7.1k
views
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma edger mroast romer camera
updated 9.8 years ago by ★ 13k • written 9.8 years ago by ▴ 180
0
votes
1
reply
1.5k
views
romer implementation in edgeR
edgeR CAMERA edgeR CAMERA
updated 9.8 years ago by 53k • written 12.4 years ago by ▴ 110
0
votes
1
reply
1.6k
views
How to do FDR p.adj manually on "mr.edgeR object" from MEDIPS package?
R Medips edgeR
updated 9.8 years ago by ▴ 570 • written 9.8 years ago by • 0
1
vote
2
replies
1.8k
views
estimateDisp runs forever but not the trio estimateGLM
edger estimateDisp
updated 9.8 years ago by ★ 29k • written 9.8 years ago by ▴ 10
3
votes
6
replies
1.4k
views
Overlapping treatments in the design matrix
edger design matrix
updated 9.8 years ago by ★ 29k • written 9.8 years ago by ▴ 10
4
votes
7
replies
1.6k
views
off-target effects in DE analysis
edger differential gene expression
updated 9.8 years ago by ★ 29k • written 9.8 years ago by ▴ 10
4
votes
7
replies
4.3k
views
DESeq2 MA plot of encode data
deseq2 normalization edger
9.8 years ago tonja.r ▴ 80
0
votes
1
reply
1.2k
views
squeezing of dispersion in the deseq2 and edger.
deseq2 edger
updated 9.8 years ago by 43k • written 9.8 years ago by ▴ 80
7
votes
11
replies
4.3k
views
Continuous variable interaction with Groups in design matrix
edger design matrix
updated 9.8 years ago by ★ 29k • written 9.8 years ago by ▴ 10
2
votes
1
reply
1.8k
views
no DGE with multiple groups in edge R
edgeR differential gene expression RNAseq
updated 9.8 years ago by ★ 29k • written 9.8 years ago by ▴ 20
1
vote
2
replies
1.8k
views
Batch effect correction for ANOVA-like DE analysis in edgeR
edgeR batch effect
9.8 years ago Manoj Hariharan ▴ 110
0
votes
4
replies
1.6k
views
edgeR GLM design question: contrasts
edger GLM
9.8 years ago jwi • 0
13
votes
11
replies
18k
views
edgeR TMM values
edger
9.8 years ago ribioinfo ▴ 100
11
votes
14
replies
5.0k
views
Setting up the Design Matrix
rnaseq edgeR multiple factor design design matrix
9.8 years ago Yogender Gowtham ▴ 20
5
votes
4
replies
8.8k
views
edgeR cpm filter with >1 factor
edger cpm multiple factor design independent filtering
9.8 years ago dietahanson ▴ 30
3
votes
5
replies
2.2k
views
deseq2, edger different number of replicates and extraction kit
deseq2 edger
9.8 years ago tonja.r ▴ 80
5
votes
6
replies
4.0k
views
Differential expression analysis - additive genetic model (how to implement it)
deseq2 edger differential gene expression additive model
10.0 years ago • updated 9.8 years ago jlerga • 0
2
votes
2
replies
1.4k
views
edger and deseq2 log2FC nornalization
deseq2 edger
9.9 years ago tonja.r ▴ 80
11
votes
10
replies
12k
views
How to determine which edgeR glmFit and glmQLFit are better
edger
updated 9.9 years ago by 53k • written 9.9 years ago by ▴ 10
5
votes
5
replies
1.9k
views
edgeR no residual degrees of freedom for a specific row of numbers in dispCoxReidInterpolateTagwise
edger rna-seq
updated 9.9 years ago by ★ 29k • written 9.9 years ago by ▴ 180
2
votes
15
replies
5.1k
views
Timeout error in kegga() using edgeR
edger kegga keggrest
9.9 years ago Likai Mao ▴ 40
2
votes
2
replies
1.2k
views
EdgeR does not change when swap the tissue column
edger rnaseq R
updated 9.9 years ago by 53k • written 9.9 years ago by • 0
2
votes
3
replies
2.3k
views
Getting up/down regulation info on DEG using edgeR
edger differential gene expression
updated 9.9 years ago by ★ 13k • written 9.9 years ago by • 0
1
vote
6
replies
7.4k
views
fold change calculation in edger
edger normalization logfc
updated 9.9 years ago by 43k • written 9.9 years ago by ▴ 80
2,031 results • Page 25 of 41
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