Showing : edgeR • reset
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Treat p > 1
edgeR glmTreat
updated 9.4 years ago by ▴ 900 • written 9.5 years ago by 68k
1
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3
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2.5k
views
Error Estimating the NB Dispersion of a Dataset
dispersion edgeR
updated 9.4 years ago by 53k • written 9.4 years ago by • 0
2
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4
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1.4k
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nested modeling for unequal groups with edgeR
edger r edger de
updated 9.4 years ago by ★ 7.9k • written 9.4 years ago by ▴ 20
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6
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1.3k
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about limma (paired design) : code verification
limma edgeR
9.4 years ago Bogdan ▴ 670
4
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1
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2.5k
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Very low EdgeR Pvalues with very small sample size
edger pvalue sample size
updated 9.4 years ago by ★ 29k • written 9.4 years ago by ▴ 40
2
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2
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1.3k
views
EdgeR-type analysis for ranked data?
EdgeR rank
9.5 years ago knaxerova ▴ 10
1
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2
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1.3k
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edgeR for CNV detection
edgeR
updated 9.5 years ago by ★ 7.9k • written 9.5 years ago by ▴ 160
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2
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2.2k
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edgeR | paired samples | multiple baseline | averaging baseline or not
edger rnaseq baseline linear model negative binomial model
updated 9.5 years ago by 53k • written 9.7 years ago by • 0
2
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2
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1.7k
views
Running Roast with Gene Symbols of Curated Genes
mroast roast gene set gene set analysis edgeR
updated 9.5 years ago by 68k • written 9.5 years ago by • 0
4
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7
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3.2k
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RNAseq reads mapped to the gene
star featurecounts edgeR RNAseq
9.5 years ago myprogramming2016 • 0
0
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4
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1.7k
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GO annotation and gene set testing for plant dataset
go edger annotation topgo bioconductor
9.5 years ago myprogramming2016 • 0
0
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3
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1.9k
views
ROAST using curated gene sets
edgeR mroast roast
9.5 years ago lattalic • 0
2
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2
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1.6k
views
EdgeR experimental design matrix
edger differential gene expression experimental design
updated 9.5 years ago by ★ 29k • written 9.5 years ago by • 0
0
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7
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1.8k
views
why two different makeContrasts have the same results?
edger makecontrasts
9.5 years ago xiaoaozqd • 0
1
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2
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1.1k
views
Thresholded testing in edgeR for only positive log fold changes
edger
updated 9.5 years ago by ★ 29k • written 9.5 years ago by ▴ 20
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2
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928
views
how/what to use to perform Differential Expression Gene if log2 available?
microarray limma edgeR
updated 9.5 years ago by 53k • written 9.5 years ago by • 0
9
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6
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4.4k
views
about paired-samples in edgeR
edger
9.5 years ago Bogdan ▴ 670
2
votes
6
replies
3.8k
views
Clustering and bootstrapping of RNASeq samples
clustering pvclust vsd edgeR rnaseq
written 9.5 years ago by ▴ 90
5
votes
12
replies
6.2k
views
Differential expression analysis: comparison of DESeq2 and edgeR robust results
deseq2 edgeR differential gene expression
updated 9.5 years ago by ★ 29k • written 9.5 years ago by ▴ 90
0
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5
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842
views
multifactor edgeR logFC
edger
9.6 years ago • updated 9.5 years ago tminning • 0
6
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6
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2.5k
views
genefilter filtered out 60% of the original genes?
genefilter edgeR
updated 9.6 years ago by ▴ 180 • written 9.6 years ago by ▴ 20
0
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3
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954
views
Proper Design Matrix for Paired Samples where endpoint has multiple samples that pair to the same start sample
edger design matrix
updated 9.6 years ago by ★ 29k • written 9.6 years ago by • 0
1
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5
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5.7k
views
Heatmaps with replicates or triplicate data sets with counts to EdgeR, DESeq, or DESeq2
heatmap.2 heatmap edgeR deseq2 deseq
updated 9.6 years ago by 43k • written 9.6 years ago by ▴ 10
1
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4
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1.4k
views
Baseline comparison using "Comparisons both between and within subjects"
edgeR
updated 9.6 years ago by 53k • written 9.6 years ago by ▴ 10
3
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3
replies
1.1k
views
edgeR: shall I fit the glm model separately for different cell lines?
edger
updated 9.6 years ago by ★ 7.9k • written 9.6 years ago by ▴ 20
1
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5
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1.6k
views
trying to change length of barcode
processamplicons edger barcode
9.6 years ago lucia.caceres • 0
2
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8
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2.5k
views
edgeR - inconsistent logFC sign
edgeR
9.6 years ago sharvari gujja ▴ 40
2
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5
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1.2k
views
a complicate scenario for Design Matrix
edgeR design matrix
updated 9.6 years ago by ★ 29k • written 9.6 years ago by • 0
2
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6
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1.9k
views
Using edgeR with "traditional" coverage data?
edger rnaseq coverage
updated 9.6 years ago by ★ 7.9k • written 9.6 years ago by • 0
2
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2
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2.5k
views
Interpreting contrasts in edgeR
edger
updated 9.6 years ago by ★ 7.9k • written 9.6 years ago by • 0
5
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7
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2.7k
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Allele Specific Expression Using edgeR
edger allelicimbalance
9.6 years ago ugwu.nelson ▴ 10
3
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1
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3.1k
views
Clustering with differentially expressed genes in RNAseq
deseq2 limma voom edger
updated 9.6 years ago by ★ 29k • written 9.6 years ago by • 0
3
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4
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3.4k
views
EdgeR - topTags sort up and down?
edgeR
9.6 years ago susan klein ▴ 10
2
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3
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1.9k
views
Error: could not find function "glmQLFit"
software error edgeR
updated 9.6 years ago by 53k • written 9.6 years ago by ▴ 10
5
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6
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2.4k
views
design matrix in GLM
edger
updated 9.6 years ago by ★ 29k • written 9.6 years ago by • 0
9
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7
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2.4k
views
EdgeR returns small logFC values when using GLM approach
edger glm logfc
9.6 years ago gergely.zsuzsa.n • 0
0
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5
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3.0k
views
How to get list of genes that are DE from the goseq analysis results
limma goseq mget edgeR
updated 9.6 years ago by 53k • written 9.6 years ago by ▴ 10
5
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7
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2.1k
views
Co-expression between host and pathogen genes
edger rna-seq
updated 9.6 years ago by ★ 29k • written 9.6 years ago by ▴ 10
3
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3
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1.8k
views
edgeR: cpm() behavior appears to depend on whether edgeR is exported into the namespace. Is this normal?
edgeR namespace
updated 9.6 years ago by 53k • written 9.6 years ago by ▴ 80
19
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4
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9.6k
views
Confidence intervals on edgeR logFC
edgeR statistics confidence interval
updated 9.6 years ago by • 0 • written 11.2 years ago by ▴ 40
1
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1
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1.8k
views
edgeR, DE between 4 different samples
edger differential gene expression GLM Tutorial
updated 9.6 years ago by 68k • written 9.6 years ago by • 0
7
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18
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4.8k
views
RNA-seq analysis using EdgeR- I need to make sure that the codes that I use to analyze the data are correct
rnaseq edger differential gene expression
updated 9.6 years ago by ★ 7.9k • written 9.7 years ago by • 0
3
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2
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5.7k
views
Design matrix not of full rank
edger
updated 9.6 years ago by ★ 29k • written 9.6 years ago by • 0
3
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4
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2.1k
views
how to use edgeR analysis RNA-seq data with a obvious deviation sample
edger RNA-seq anova
updated 9.6 years ago by ★ 29k • written 9.6 years ago by • 0
5
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12
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2.8k
views
how to use edgeR analysis RNA-seq data which has four factors
edger design matrix comparing more than two groups multiple factor design
9.9 years ago • updated 9.6 years ago xiaoaozqd • 0
3
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7
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5.2k
views
edgeR glmLRT and interaction effect: an example
rna-seq edger glmlrt interactions
updated 9.6 years ago by 53k • written 9.7 years ago by ▴ 90
2
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1
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1.0k
views
how to design contrast formula in different developemntal stage
EdgeR
updated 9.7 years ago by 53k • written 9.7 years ago by ▴ 10
2
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2
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2.1k
views
normalized read count per group from edgeR
microrna edger
9.7 years ago manoharankumar01 • 0
2
votes
16
replies
4.7k
views
Approaches to group the RNA-Seq samples with large heterogeneity
clustering pca deseq2 edger logfoldchange
updated 9.7 years ago by 43k • written 9.7 years ago by ▴ 10
7
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2
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2.0k
views
How to evaluate a p-value histogram from treat or other threshold tests?
edger limma deseq2 p-value distribution
updated 9.7 years ago by 53k • written 9.7 years ago by ★ 7.9k
2,031 results • Page 24 of 41
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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