Bioconductor EmptyDrops

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scrn 10x scRNAseq emptyDrops DropletUtils

26 days ago • updated 17 days ago Peter Hickey ▴ 760

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932

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CellRanger emptyDrops scRNAseq 10X

17 months ago rocanja ▴ 60

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SingleCell emptyDrops 10X

updated 2.3 years ago by Peter Hickey ▴ 760 • written 2.3 years ago by sandra.garces.19 • 0

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DropletUtils emptyDrops scRNA scRNAseq 10x

3.1 years ago • updated 3.0 years ago Peter Hickey ▴ 760

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DropletUtils emptyDrops 10x

updated 4.6 years ago by Aaron Lun ★ 29k • written 4.6 years ago by Peter Hickey ▴ 760

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.9 years ago by Aaron Lun ★ 29k • written 6.0 years ago by C T ▴ 140

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DropletUtils EmptyDrops simpleSingleCell

updated 3.1 years ago by Stefano Mangiola ▴ 40 • written 6.1 years ago by shbrief ▴ 20

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dropletutils emptydrops

updated 6.3 years ago by Aaron Lun ★ 29k • written 6.3 years ago by rosano • 0

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

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How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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