Bioconductor EmptyDrops

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1.0k

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scrn 10x scRNAseq emptyDrops DropletUtils

5 months ago Peter Hickey ▴ 760

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1.2k

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CellRanger emptyDrops scRNAseq 10X

22 months ago rocanja ▴ 60

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1.6k

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SingleCell emptyDrops 10X

updated 2.7 years ago by Peter Hickey ▴ 760 • written 2.7 years ago by sandra.garces.19 • 0

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4.7k

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DropletUtils emptyDrops scRNA scRNAseq 10x

3.5 years ago • updated 3.4 years ago Peter Hickey ▴ 760

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1.6k

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DropletUtils emptyDrops 10x

updated 5.0 years ago by Aaron Lun ★ 29k • written 5.0 years ago by Peter Hickey ▴ 760

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3.1k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 5.2 years ago by Aaron Lun ★ 29k • written 6.4 years ago by C T ▴ 140

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5.6k

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DropletUtils EmptyDrops simpleSingleCell

updated 3.4 years ago by Stefano Mangiola ▴ 40 • written 6.5 years ago by shbrief ▴ 20

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1.7k

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dropletutils emptydrops

updated 6.7 years ago by Aaron Lun ★ 29k • written 6.7 years ago by rosano • 0

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Comment: Are individual-mouse-based statistics possible in CellChat? by TikTsossakaas33ocissalpc • 0

Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…

Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

Answer: limpa analysis advice by Gordon Smyth 53k

It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…

Answer: When to use edgeR or limma by Gordon Smyth 53k

The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

I updated the above answer today.

Votes

Answer: When to use edgeR or limma

A: deseq2 - paired samples in 2 sequencing types with very different library sizes

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Popular Question to Lluís Revilla Sancho ▴ 760