Bioconductor EmptyDrops

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CellRanger emptyDrops scRNAseq 10X

12 months ago rocanja ▴ 60

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1.1k

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SingleCell emptyDrops 10X

updated 22 months ago by Peter Hickey ▴ 750 • written 22 months ago by sandra.garces.19 • 0

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3.6k

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DropletUtils emptyDrops scRNA scRNAseq 10x

2.6 years ago Peter Hickey ▴ 750

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1.3k

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DropletUtils emptyDrops 10x

updated 4.2 years ago by Aaron Lun ★ 28k • written 4.2 years ago by Peter Hickey ▴ 750

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2.5k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.4 years ago by Aaron Lun ★ 28k • written 5.6 years ago by C T ▴ 140

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5.2k

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DropletUtils EmptyDrops simpleSingleCell

updated 2.6 years ago by Stefano Mangiola ▴ 40 • written 5.6 years ago by shbrief ▴ 20

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1.4k

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dropletutils emptydrops

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by rosano • 0

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Comment: Ensembl site unresponsive via biomaRt by Mike Smith ★ 6.6k

I think this is an unrelated issue. The original post includes the message `Error: 'curl_parse_url' is not an exported object from 'namesp…

Comment: pairedGSEA input files by shdam ▴ 10

Hi Sara, Apologies for the slow response! James is exactly right. Both `salmon` and `kallisto` can produce transcript counts, if you map …

Comment: Unused arguments error without used arguments in GSVA? by michaelarringtony • 0

Perhaps from a direct call to gsva without the parameter [Sprunki Pyramixed][1] object [1]: https://pyramixed.io/

Comment: EdgeR Biological CVs by jeffreestary • 0

By default, edgeR uses an empirical Bayes approach to shrink gene-wise dispersions toward a trended or [PolyTrack][1] common value, which i…

Comment: How to reverse complement some elements of a DNAStringSet by shrill.asp.tufl • 0

Dealing with DNAStringSet manipulation can be tricky! When selectively reverse complementing sequences, consider how to efficiently retain …

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Comment: Limma comparing gene expression between base line and one treatment

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

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