Bioconductor EmptyDrops

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1.0k

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scrn 10x scRNAseq emptyDrops DropletUtils

5 months ago Peter Hickey ▴ 760

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1.2k

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CellRanger emptyDrops scRNAseq 10X

22 months ago rocanja ▴ 60

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1.6k

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SingleCell emptyDrops 10X

updated 2.7 years ago by Peter Hickey ▴ 760 • written 2.7 years ago by sandra.garces.19 • 0

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4.7k

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DropletUtils emptyDrops scRNA scRNAseq 10x

3.5 years ago • updated 3.4 years ago Peter Hickey ▴ 760

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1.6k

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DropletUtils emptyDrops 10x

updated 5.0 years ago by Aaron Lun ★ 29k • written 5.0 years ago by Peter Hickey ▴ 760

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3.1k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 5.2 years ago by Aaron Lun ★ 29k • written 6.4 years ago by C T ▴ 140

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5.6k

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DropletUtils EmptyDrops simpleSingleCell

updated 3.4 years ago by Stefano Mangiola ▴ 40 • written 6.5 years ago by shbrief ▴ 20

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1.7k

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dropletutils emptydrops

updated 6.7 years ago by Aaron Lun ★ 29k • written 6.7 years ago by rosano • 0

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Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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