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emptyDrops
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emptyDrops new default alpha = Inf giving far fewer non-empty droplets than under old default of alpha = NULL
scrn
10x
scRNAseq
emptyDrops
DropletUtils
4 months ago
Peter Hickey
▴ 760
0
votes
2
replies
1.1k
views
Non-empty droplets versus good quality cells
CellRanger
emptyDrops
scRNAseq
10X
21 months ago
rocanja
▴ 60
0
votes
1
reply
1.5k
views
Choosing the right lower limit for emptyDrops
SingleCell
emptyDrops
10X
updated 2.6 years ago by
Peter Hickey
▴ 760 • written 2.6 years ago by
sandra.garces.19
• 0
4
votes
5
replies
4.3k
views
`emptyDrops()` calling 'too many' non-empty droplets
DropletUtils
emptyDrops
scRNA
scRNAseq
10x
3.4 years ago • updated 3.3 years ago
Peter Hickey
▴ 760
1
vote
1
reply
1.6k
views
Number of non-empty drops returned by emptyDrops() depends on value of test.ambience
DropletUtils
emptyDrops
10x
updated 4.9 years ago by
Aaron Lun
★ 29k • written 4.9 years ago by
Peter Hickey
▴ 760
4
votes
5
replies
3.0k
views
emptyDrops identified less non-empty cells with lower total UMI counts?
DropletUtils
scRNA-seq
emptyDrops
simplesinglecell
cell calling
updated 5.2 years ago by
Aaron Lun
★ 29k • written 6.3 years ago by
C T
▴ 140
5
votes
1
reply
5.6k
views
Error with DropletUtils::EmptyDrops()
DropletUtils
EmptyDrops
simpleSingleCell
updated 3.4 years ago by
Stefano Mangiola
▴ 40 • written 6.4 years ago by
shbrief
▴ 20
0
votes
2
replies
1.7k
views
Scalability of emptyDrops() running times
dropletutils
emptydrops
updated 6.6 years ago by
Aaron Lun
★ 29k • written 6.6 years ago by
rosano
• 0
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