Bioconductor Ensembldb

Showing : ensembldb • reset

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5.8k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 7 weeks ago by shepherl 3.9k • written 2.3 years ago by jon.klonowski ▴ 40

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4.1k

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biomaRt ensembldb UniProt.ws

updated 6 months ago by Marcel Ramos 690 • written 21 months ago by Recep ▴ 20

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5.6k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 4 weeks ago by Shiva • 0 • written 5.5 years ago by Guido Hooiveld ★ 3.9k

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1.4k

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ensembldb

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by Max ▴ 10

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315

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ensembldb genomei GenomeInfoDb

12 weeks ago Kai Hu ▴ 70

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503

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Rstudio cDNA ensembldb NCBI

5 months ago R_Page • 0

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258

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ensembldb

updated 11 days ago by James W. MacDonald 65k • written 11 days ago by Fara • 0

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800

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RStudio convert ensembldb NCBI

6 months ago • updated 5 months ago j_denton • 0

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227

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ensembldb biomaRt

updated 11 weeks ago by Robin • 0 • written 12 weeks ago by Pez ▴ 10

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226

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TxDb.Mmusculus.UCSC.mm9.knownGene ensembldb GenomicFeatures Mus_musculus

updated 11 weeks ago by James W. MacDonald 65k • written 12 weeks ago by ramonmassoni ▴ 10

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1.5k

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ensembldb biomaRt

updated 9 months ago by Michael Love 41k • written 9 months ago by Benjamin ▴ 30

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2.6k

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ensembldb SNP SNPData genomes

written 2.2 years ago by Weiqiong • 0

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562

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GO ensembldb

6 months ago Rockbar • 0

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966

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Annotation biomaRt ensembldb

written 2.5 years ago by Lillian • 0

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171

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ensembldb transcriptome genome coordinateconversion

updated 4 weeks ago by Michael Love 41k • written 5 weeks ago by saadmurtazakhan ▴ 10

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491

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Rsubread ensembldb

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by Ya • 0

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842

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AnnotationHubSoftware ensembldb

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by cjag • 0

17 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Comment: fgsea significant result by Chris • 0

Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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