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ensemble mart
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reset
6
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1.3k
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biomart R code cannot retrieve gene symbol
biomart
ensemblbiomart
ensemble mart
6.1 years ago
emmak
▴ 20
0
votes
0
replies
1.1k
views
News:
Ensembl 87 is out!
ensembl
ensemble mart
ensembl mart
biomart
News
7.4 years ago
amonida
▴ 20
0
votes
2
replies
1.1k
views
ENSEMBL_MART_FUNCGEN not accessible through biomaRt?
biomart
regulatory
ensemble mart
ensembldb
updated 7.9 years ago by
Thomas Maurel
▴ 800 • written 7.9 years ago by
Sigve Nakken
▴ 50
3
votes
3
replies
1.5k
views
Premature EOF within Description Field - Bos Taurus
biomart
ensemble mart
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
andrew.j.skelton73
▴ 370
0
votes
0
replies
1.2k
views
Low yield mapping ensembl transcript ids to entrez gene ids in biomart
biomart
ensembl
ensemble mart
entrez gene identifiers
8.2 years ago
serpalma.v
▴ 60
0
votes
0
replies
1.6k
views
News:
Ensembl 83 is out!
ensemble mart
ensembl
biomart
ensembl release
News
8.4 years ago
amonida
▴ 20
1
vote
3
replies
2.4k
views
getSequence from biomaRt but Error in martCheck
R
biomart
ensemble mart
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
Gabriela Santos
• 0
7 results • Page
1 of 1
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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tangming2005
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