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Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa
by
priyanka.m
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Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.
Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values
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wahaha
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I found the reason, because some gene expression levels are 0 in all samples.
you can add these code to check the data:
>exp_mean <- appl…
Answer: DESeq2 how to specify contrast to test difference of differences
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Nicole
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The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…
Comment: DESeq2 how to specify contrast to test difference of differences
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Nicole
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Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…
Comment: Rsamtools is not available for (for R version 4.0.2)
by
olinares-perdomo
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I had the same problem (R 4.2.0)
I used
BiocManager::install("Rsamtools", force = TRUE)
And it is working fine
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