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foldchange
•
reset
1
vote
2
replies
1.2k
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod
FoldChange
edgeR
RNASeq
21 months ago
Sabiha
▴ 20
1
vote
1
reply
5.1k
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 2.2 years ago by
Rory Stark
★ 5.2k • written 2.2 years ago by
bhandary.8590
▴ 20
4
votes
4
replies
1.6k
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
2.3 years ago • updated 2.2 years ago
bhandary.8590
▴ 20
0
votes
2
replies
2.3k
views
DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2
TPM
Foldchange
updated 3.5 years ago by
Michael Love
43k • written 3.5 years ago by
dadca596
• 0
0
votes
1
reply
1.3k
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 3.7 years ago by
Gordon Smyth
53k • written 3.7 years ago by
johndavidgriner74
• 0
0
votes
2
replies
1.7k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 3.7 years ago by
Michael Love
43k • written 3.7 years ago by
yampolsk
• 0
3
votes
5
replies
7.5k
views
How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
4.0 years ago
zhxiaokang
▴ 20
2
votes
9
replies
3.3k
views
extract fold change of a list of gene from EdgeR?
EdgeR
RNAseq
Foldchange
updated 4.2 years ago by
swbarnes2
★ 1.4k • written 4.2 years ago by
najib
• 0
0
votes
7
replies
4.5k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 4.9 years ago by
Gordon Smyth
53k • written 4.9 years ago by
lessismore
▴ 20
4
votes
5
replies
2.0k
views
All genes display positive fold change in topTable results after limma
limma
microarray
foldchange
DEG
GEO
updated 5.6 years ago by
Gordon Smyth
53k • written 5.6 years ago by
Pietro
▴ 40
1
vote
1
reply
1.8k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 6.4 years ago by
Michael Love
43k • written 6.7 years ago by
fiona.dick91
▴ 60
5
votes
4
replies
1.8k
views
Foldchange values Limma
limma
RNAseq
foldchange
6.6 years ago • updated 6.5 years ago
susana.amaral.teixeira
▴ 20
12 results • Page
1 of 1
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Replies
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexecutor4
• 0
FFH4X is a [Free Fire mod][1] menu APK that offers cheats like auto headshot, aimbot, ESP, wallhack, and unlimited skins. Players use it to…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure
by
Skyler
• 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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