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foldchange
•
reset
1
vote
2
replies
1.3k
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod
FoldChange
edgeR
RNASeq
2.0 years ago
Sabiha
▴ 20
1
vote
1
reply
5.2k
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 2.4 years ago by
Rory Stark
★ 5.2k • written 2.5 years ago by
bhandary.8590
▴ 20
4
votes
4
replies
1.7k
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
2.5 years ago
bhandary.8590
▴ 20
0
votes
2
replies
2.4k
views
DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2
TPM
Foldchange
updated 3.7 years ago by
Michael Love
43k • written 3.7 years ago by
dadca596
• 0
0
votes
1
reply
1.4k
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 4.0 years ago by
Gordon Smyth
53k • written 4.0 years ago by
johndavidgriner74
• 0
0
votes
2
replies
1.8k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 4.0 years ago by
Michael Love
43k • written 4.0 years ago by
yampolsk
• 0
3
votes
5
replies
7.8k
views
How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
4.3 years ago
zhxiaokang
▴ 20
2
votes
9
replies
3.4k
views
extract fold change of a list of gene from EdgeR?
EdgeR
RNAseq
Foldchange
updated 4.5 years ago by
swbarnes2
★ 1.4k • written 4.5 years ago by
najib
• 0
0
votes
7
replies
4.8k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 5.1 years ago by
Gordon Smyth
53k • written 5.1 years ago by
lessismore
▴ 20
4
votes
5
replies
2.1k
views
All genes display positive fold change in topTable results after limma
limma
microarray
foldchange
DEG
GEO
updated 5.9 years ago by
Gordon Smyth
53k • written 5.9 years ago by
Pietro
▴ 40
1
vote
1
reply
1.8k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 6.7 years ago by
Michael Love
43k • written 7.0 years ago by
fiona.dick91
▴ 60
5
votes
4
replies
1.9k
views
Foldchange values Limma
limma
RNAseq
foldchange
6.8 years ago
susana.amaral.teixeira
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Comment: nice 3D displays for PCA analysis
by
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• 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
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• 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
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TikTsokaasocissalpc
• 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long?
by
ATpoint
★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
Votes
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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