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foldchange
•
reset
1
vote
2
replies
931
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod
FoldChange
edgeR
RNASeq
13 months ago
Sabiha
▴ 20
1
vote
1
reply
4.7k
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 18 months ago by
Rory Stark
★ 5.2k • written 19 months ago by
bhandary.8590
▴ 20
4
votes
4
replies
1.3k
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
20 months ago • updated 19 months ago
bhandary.8590
▴ 20
0
votes
2
replies
2.0k
views
DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2
TPM
Foldchange
updated 2.9 years ago by
Michael Love
43k • written 2.9 years ago by
dadca596
• 0
0
votes
1
reply
1.1k
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 3.1 years ago by
Gordon Smyth
52k • written 3.1 years ago by
johndavidgriner74
• 0
0
votes
2
replies
1.5k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 3.1 years ago by
Michael Love
43k • written 3.1 years ago by
yampolsk
• 0
3
votes
5
replies
6.5k
views
How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
3.4 years ago
zhxiaokang
▴ 20
2
votes
9
replies
2.9k
views
extract fold change of a list of gene from EdgeR?
EdgeR
RNAseq
Foldchange
updated 3.6 years ago by
swbarnes2
★ 1.4k • written 3.6 years ago by
najib
• 0
0
votes
7
replies
3.5k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 4.3 years ago by
Gordon Smyth
52k • written 4.3 years ago by
lessismore
▴ 20
4
votes
5
replies
1.7k
views
All genes display positive fold change in topTable results after limma
limma
microarray
foldchange
DEG
GEO
updated 5.0 years ago by
Gordon Smyth
52k • written 5.0 years ago by
Pietro
▴ 40
1
vote
1
reply
1.6k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 5.8 years ago by
Michael Love
43k • written 6.1 years ago by
fiona.dick91
▴ 60
5
votes
4
replies
1.6k
views
Foldchange values Limma
limma
RNAseq
foldchange
6.0 years ago • updated 5.9 years ago
susana.amaral.teixeira
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Comment: WGCNA coupled with differential expression analysis: question about baseline mod
by
hetaf16210
• 0
@[slope][1] If feasible, consider conducting both analyses. Start with a pooled analysis to identify broad patterns, then conduct separate …
Comment: DESeq2 adujsted p-value cutoff seemingly not working
by
980linnet
• 0
Stuck on DESeq2 with alpha=.05 for padj cutoff. Can't seem to get the differential expression analysis to stick the landing - it's like try…
Comment: internal error in trio library when trying to use lfmm() in LEA package
by
PW
• 0
>ERROR: unable to open file D://anole_geno.snmf/K1/run1/anole_geno_r1.1.Q. Please, check that the name of the file you provided is correct.…
Comment: DESeq2 adujsted p-value cutoff seemingly not working
by
Guilherme
• 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp
by
Ian D.
▴ 70
Please can you comment on this @rory.
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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