Bioconductor Foldchange

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1.3k

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StatisticalMethod FoldChange edgeR RNASeq

23 months ago Sabiha ▴ 20

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5.2k

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FoldChange DiffBind lfcShrink

updated 2.4 years ago by Rory Stark ★ 5.2k • written 2.4 years ago by bhandary.8590 ▴ 20

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1.7k

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FoldChange DiffBind lfcShrink Cut&TagData

2.5 years ago • updated 2.4 years ago bhandary.8590 ▴ 20

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2.4k

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DESeq2 TPM Foldchange

updated 3.7 years ago by Michael Love 43k • written 3.7 years ago by dadca596 • 0

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1.4k

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edgeR RNA-Seq log2 foldchange q_value

updated 3.9 years ago by Gordon Smyth 53k • written 3.9 years ago by johndavidgriner74 • 0

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1.7k

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sign FoldChange DESeq2 reference

updated 3.9 years ago by Michael Love 43k • written 3.9 years ago by yampolsk • 0

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7.7k

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DifferentialExpression DEA FC FoldChange edgeR

4.2 years ago zhxiaokang ▴ 20

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3.4k

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EdgeR RNAseq Foldchange

updated 4.4 years ago by swbarnes2 ★ 1.4k • written 4.4 years ago by najib • 0

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4.6k

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foldchange topGO DifferentialExpression enrichment

updated 5.1 years ago by Gordon Smyth 53k • written 5.1 years ago by lessismore ▴ 20

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2.1k

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limma microarray foldchange DEG GEO

updated 5.8 years ago by Gordon Smyth 53k • written 5.8 years ago by Pietro ▴ 40

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1.8k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 6.6 years ago by Michael Love 43k • written 6.9 years ago by fiona.dick91 ▴ 60

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1.9k

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limma RNAseq foldchange

6.8 years ago • updated 6.7 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to jared.andrews07 ▴ 30

Popular Question to James W. MacDonald 68k