Showing : gcrma • reset
4
votes
3
replies
1.1k
views
GCRMA not working inside tryCatch block in R
gcrma simpleaffy error handling trycatch
updated 5.6 years ago by 65k • written 5.6 years ago by • 0
3
votes
4
replies
1.0k
views
gcrma problem with make.cdf.package
gcrma make.cdf.package affy
updated 4.0 years ago by 65k • written 4.0 years ago by ▴ 40
2
votes
3
replies
878
views
Using gcrma() and using the t-test to compare single genes of interest for disease vs healthy comparison?
gcrma CustomCDF Affyhgu133aExpr limma affy
updated 12 months ago by 65k • written 12 months ago by ▴ 10
2
votes
9
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3.3k
views
mta10cdf not installed Bioconductor
gcrma
updated 7.8 years ago by ▴ 40 • written 9.4 years ago by • 0
2
votes
3
replies
3.2k
views
gcrma vs. rma
gcrma gcrma
updated 20.4 years ago by ★ 1.1k • written 20.4 years ago by ▴ 80
2
votes
7
replies
1.6k
views
Package gcrma: unused argument (validate = FALSE)
gcrma
updated 6.9 years ago by ★ 3.9k • written 6.9 years ago by ▴ 10
2
votes
3
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1.4k
views
unusal expression level values after normalization in Affymetrix microarray experiment
microarray gcrma affy hgu133a normalization
updated 7.1 years ago by 50k • written 7.1 years ago by ▴ 50
1
vote
4
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1.6k
views
AGI code in gcrma normalization output
gcrma software error annotation
updated 8.4 years ago by 65k • written 8.4 years ago by ▴ 40
1
vote
4
replies
6.5k
views
How is LIMMA actually calculating the average expression value
probe limma gcrma probe limma gcrma
updated 10.9 years ago by ▴ 150 • written 10.9 years ago by 50k
1
vote
4
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1.6k
views
Trouble with gcrma, Segfault on background correction
gcrma affy
updated 9.5 years ago by 65k • written 9.5 years ago by ▴ 30
1
vote
1
reply
1.6k
views
gcrma failed on mouse Gene 1.0 ST array
probe gcrma probe gcrma
updated 12.6 years ago by ★ 3.9k • written 12.6 years ago by ▴ 50
1
vote
8
replies
7.1k
views
Limma, SAM and Fold Change Calculation
affy limma gcrma siggenes
updated 7.1 years ago by 50k • written 16.8 years ago by ▴ 80
1
vote
2
replies
1.9k
views
Help needed: extracting raw intensity values from Affy
probe affy gcrma probe affy gcrma
updated 10.3 years ago by ▴ 20 • written 10.3 years ago by ★ 1.5k
0
votes
1
reply
1.3k
views
Is GCRMA normalization possible with oligo?
oligo pd.moe430a gcrma affymetrix normalization
updated 4.4 years ago by • 0 • written 5.3 years ago by ★ 3.9k
0
votes
1
reply
827
views
gcrma bug fixed--currently available from CVS
Cancer mgu74av2 gcrma GENE.E Cancer mgu74av2 gcrma GENE.E
updated 20.6 years ago by ★ 2.9k • written 20.6 years ago by ▴ 50
0
votes
1
reply
892
views
degraded RNA and background correction
Normalization GO gcrma Normalization GO gcrma
18.2 years ago Jenny Drnevich ★ 2.2k
0
votes
3
replies
1.4k
views
GCRMA: feature request
GO Regression probe gcrma frma GO Regression probe gcrma frma
updated 13.3 years ago by ▴ 250 • written 13.3 years ago by ★ 3.9k
0
votes
1
reply
1.7k
views
Help with GSEA package
hu6800 cdf genefilter multtest affy gcrma siggenes annaffy GSEABase hu6800 cdf multtest
updated 13.4 years ago by 25k • written 13.4 years ago by ▴ 20
0
votes
1
reply
1.4k
views
double violation of normalization assumptions?
Normalization probe limma gcrma Normalization probe limma gcrma
updated 18.3 years ago by ★ 6.0k • written 18.3 years ago by ★ 2.2k
0
votes
0
replies
1.1k
views
mas5call select genes
affy gcrma simpleaffy affy gcrma simpleaffy
19.2 years ago Naomi Altman ★ 6.0k
0
votes
1
reply
601
views
m430aprobe
probe gcrma probe gcrma
updated 20.7 years ago by ★ 13k • written 20.7 years ago by ▴ 80
0
votes
1
reply
814
views
RMA question + GCRMA question
GO gcrma GO gcrma
updated 20.7 years ago by ★ 2.3k • written 20.7 years ago by ▴ 720
0
votes
3
replies
1.0k
views
how long to calculate gcrma on 16 arrays?
mgu74av2 Biobase affy gcrma mgu74av2 Biobase affy gcrma
updated 20.6 years ago by 65k • written 20.6 years ago by ★ 1.4k
0
votes
3
replies
953
views
gcrma
mgu74av2 gcrma GENE.E mgu74av2 gcrma GENE.E
updated 20.6 years ago by ▴ 410 • written 20.6 years ago by ▴ 30
0
votes
1
reply
862
views
comparing hgu133a chips with 3mg total RNA to 1mg total RNA
hgu133a gcrma hgu133a gcrma
updated 20.6 years ago by ★ 2.3k • written 20.6 years ago by ★ 1.4k
0
votes
2
replies
789
views
gcrma
gcrma gcrma
updated 20.6 years ago by ★ 2.3k • written 20.6 years ago by ▴ 500
0
votes
0
replies
776
views
Issue with gcrma.engine2 and user-defined negative controls
gcrma gcrma
15.9 years ago Heidi Dvinge ★ 2.0k
0
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0
replies
667
views
Bioconductor Digest, Vol 47, Issue 26
GO cdf probe affy gcrma PROcess convert GO cdf probe affy gcrma PROcess convert
17.2 years ago Manhong Dai ▴ 200
0
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0
replies
682
views
citations
gcrma gcrma
20.5 years ago Akil Abid Merchant ▴ 80
0
votes
1
reply
912
views
help w/ bg.correct.gcrma
affy gcrma affy gcrma
updated 20.5 years ago by ▴ 20 • written 20.5 years ago by ★ 2.2k
0
votes
2
replies
859
views
RMA question
gcrma gcrma
updated 20.7 years ago by ★ 2.3k • written 20.7 years ago by ▴ 720
0
votes
0
replies
754
views
Bug in gcrma_0.4.0?
Microarray Cancer gcrma Microarray Cancer gcrma
20.7 years ago James W. MacDonald 65k
0
votes
6
replies
1.9k
views
ReadAffy Error: new versions causing problems?
genefilter gcrma matchprobes simpleaffy affyio genefilter gcrma matchprobes simpleaffy
updated 16.9 years ago by ▴ 20 • written 16.9 years ago by ▴ 200
0
votes
2
replies
1.1k
views
Matchprobe package
cdf probe gcrma cdf probe gcrma
updated 18.7 years ago by ▴ 120 • written 18.7 years ago by ★ 13k
0
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0
replies
757
views
best algorithm Affy low end signal
affy gcrma affy gcrma
20.4 years ago Anthony Bosco ▴ 500
0
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0
replies
788
views
gcrma question
gcrma gcrma
20.7 years ago Phguardiol@aol.com ▴ 720
0
votes
1
reply
850
views
gcrma and memory size - rhdf5 question
affy gcrma affy gcrma
updated 20.4 years ago by 65k • written 20.4 years ago by ▴ 720
0
votes
0
replies
747
views
RE: gcrma
hgu133a affycomp gcrma PROcess hgu133a affycomp gcrma PROcess
20.4 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
0
votes
1
reply
909
views
gcrma memory problems in R1.8.1 and R1.9.0-devel
hgu133a gcrma hgu133a gcrma
updated 20.3 years ago by ▴ 720 • written 20.3 years ago by ★ 1.4k
0
votes
0
replies
757
views
related question about computers and bioC
GO gcrma GO gcrma
20.3 years ago Phguardiol@aol.com ▴ 720
0
votes
0
replies
753
views
informatic system requirement for microarray analysis
GO gcrma GO gcrma
20.3 years ago Phguardiol@aol.com ▴ 720
0
votes
1
reply
837
views
gcrma on small computers
Biobase reposTools affy gcrma Biobase reposTools affy gcrma
updated 20.3 years ago by ▴ 410 • written 20.3 years ago by ▴ 720
0
votes
0
replies
633
views
Test version of gcrma!
gcrma gcrma
20.3 years ago Puhong Gao ▴ 140
0
votes
2
replies
1.1k
views
iterative gcrma on 92 slides?
Normalization mgu74av2 gcrma PROcess Normalization mgu74av2 gcrma PROcess
updated 20.3 years ago by ▴ 130 • written 20.3 years ago by ★ 1.4k
0
votes
5
replies
1.4k
views
Development of GCRMA-like methods
gcrma oligo gcrma oligo
20.2 years ago Matthew Hannah ▴ 940
0
votes
1
reply
831
views
GCRMA methods
gcrma gcrma
updated 20.2 years ago by ★ 2.3k • written 20.2 years ago by ▴ 500
0
votes
0
replies
826
views
makeProbePackage problems?
probe gcrma probe gcrma
20.2 years ago Matthew Hannah ▴ 940
0
votes
1
reply
700
views
GCRMA missing value error on ATH1 chip
gcrma gcrma
updated 20.2 years ago by ▴ 410 • written 20.2 years ago by ▴ 940
0
votes
1
reply
868
views
warning message from using gcrma
gcrma gcrma
updated 20.2 years ago by ★ 2.3k • written 20.2 years ago by ▴ 100
0
votes
0
replies
723
views
Re: Bioconductor Digest, Vol 6, Issue
gcrma convert gcrma convert
20.7 years ago Leslie Cope ▴ 50
50 results • Page 1 of 1
Recent ...
Replies
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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