Showing : geneplotter • reset
6
votes
5
replies
14k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 7.9 years ago by 25k • written 7.9 years ago by ▴ 10
0
votes
1
reply
2.0k
views
install geneplotter
geneplotter geneplotter
updated 11.0 years ago by 67k • written 11.0 years ago by ★ 13k
0
votes
0
replies
1.8k
views
library(\"geneplotter\") fails on load
GO hgu95av2 geneplotter GO hgu95av2 geneplotter
11.6 years ago Guest User ★ 13k
0
votes
0
replies
1.2k
views
geneplotter - buildChromLoc for arrays with no .db
GO geneplotter GO geneplotter
12.0 years ago Lavinia Gordon ▴ 480
0
votes
1
reply
1.2k
views
geneplotter - buildChromLoc for arrays with no .db package
GO geneplotter GO geneplotter
updated 12.0 years ago by ★ 7.2k • written 12.0 years ago by ▴ 480
0
votes
13
replies
2.6k
views
How to plot NGS data?
GO BSgenome geneplotter PROcess BSgenome genomes GO BSgenome geneplotter PROcess genomes
updated 12.8 years ago by 25k • written 12.8 years ago by ▴ 30
0
votes
1
reply
1.4k
views
Error installing geneplotter
geneplotter geneplotter
updated 13.1 years ago by ★ 8.2k • written 13.1 years ago by ★ 13k
0
votes
1
reply
1.5k
views
bug info
Microarray Normalization geneplotter graph limma Microarray Normalization geneplotter
updated 13.5 years ago by 6.7k • written 13.5 years ago by ▴ 10
0
votes
3
replies
2.2k
views
Bioconductor / plotting SNPs, runs of homozygosity
SNP geneplotter SNPchip SNP geneplotter SNPchip
updated 14.4 years ago by 6.7k • written 14.4 years ago by ▴ 40
0
votes
0
replies
2.5k
views
How to plot gene on their chromosome?
Annotation Cancer geneplotter idiogram rtracklayer Annotation Cancer geneplotter idiogram
15.5 years ago Martin Morgan 25k
0
votes
5
replies
1.9k
views
annotate incompatible with RdbiPgSQL !?!
annotate geneplotter Rdbi RdbiPgSQL annotate geneplotter Rdbi RdbiPgSQL
updated 15.6 years ago by 67k • written 15.6 years ago by ▴ 160
0
votes
0
replies
1.1k
views
Visulising KEGG pathways using KEGGSOAP - example code
Pathways geneplotter KEGGSOAP biomaRt GEOquery Pathways geneplotter KEGGSOAP biomaRt
15.6 years ago michael watson IAH-C ★ 3.4k
0
votes
5
replies
3.4k
views
From eSet to AffyBatch Object
geneplotter affy geneplotter affy
updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 120
0
votes
3
replies
1.4k
views
Ringo: Error in preprocess() with R-2.7.0, but not with R-2.5.0
probe annotate geneplotter affy vsn Ringo probe annotate geneplotter affy vsn Ringo
updated 16.4 years ago by ▴ 730 • written 16.4 years ago by ▴ 110
0
votes
0
replies
1.1k
views
Colors in cColor from geneplotter
probe geneplotter probe geneplotter
16.5 years ago Heidi Dvinge ★ 2.0k
0
votes
0
replies
848
views
buildChromLocation with Drosophila2 Affy arrays
geneplotter geneplotter
16.6 years ago Blanchette, Marco ▴ 10
0
votes
2
replies
1.4k
views
Rgraphviz edge attributes can't be changed on Mac
Biobase geneplotter Rgraphviz Biobase geneplotter Rgraphviz
updated 17.1 years ago by ▴ 540 • written 17.1 years ago by ★ 1.6k
0
votes
4
replies
2.4k
views
Installing beadarray
annotate geneplotter beadarray AnnotationDbi annotate geneplotter beadarray AnnotationDbi
updated 17.1 years ago by 21k • written 17.1 years ago by ▴ 270
0
votes
1
reply
1.2k
views
Rgraphviz edge attributes can't be changed on Mac
geneplotter Rgraphviz geneplotter Rgraphviz
updated 17.1 years ago by 16k • written 17.1 years ago by ★ 1.6k
0
votes
1
reply
1.5k
views
Problem reading data with beadarray package
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 17.1 years ago by ▴ 460 • written 17.1 years ago by ▴ 10
0
votes
2
replies
1.3k
views
vsm2
Survival geneplotter affy vsn limma affyio Survival geneplotter affy vsn limma affyio
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ▴ 70
0
votes
1
reply
1.3k
views
beadarray: combining several beadsummary data objects
Biobase geneplotter affy affyio beadarray Biobase geneplotter affy affyio beadarray
updated 17.2 years ago by ▴ 460 • written 17.2 years ago by ▴ 70
0
votes
4
replies
2.3k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 17.3 years ago by ▴ 500 • written 17.3 years ago by ★ 1.4k
0
votes
6
replies
3.7k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 17.3 years ago by ▴ 220 • written 17.3 years ago by ★ 2.2k
0
votes
0
replies
2.0k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
17.3 years ago Min Wook Kim ▴ 20
0
votes
2
replies
1.3k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 17.3 years ago by ★ 7.2k • written 17.3 years ago by ▴ 30
0
votes
1
reply
1.4k
views
beadarray - combing
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 17.3 years ago by ▴ 320 • written 17.3 years ago by ▴ 270
0
votes
1
reply
1.5k
views
ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 17.3 years ago by ▴ 320 • written 17.3 years ago by ▴ 410
0
votes
3
replies
1.7k
views
beadarray package: problem with bead level data
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 17.4 years ago by ▴ 40 • written 17.4 years ago by ▴ 270
0
votes
1
reply
1.4k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
17.5 years ago Steven McKinney ▴ 310
0
votes
1
reply
1.3k
views
beadarray readIllumina suggestions
Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy
updated 17.5 years ago by ▴ 460 • written 17.5 years ago by ▴ 10
0
votes
3
replies
1.3k
views
chromosome plot
zebrafish geneplotter zebrafish geneplotter
updated 17.5 years ago by ★ 7.4k • written 17.5 years ago by ▴ 160
0
votes
4
replies
2.4k
views
smoothScatter axis limits
annotate geneplotter annotate geneplotter
updated 17.5 years ago by ★ 1.9k • written 17.5 years ago by ▴ 250
0
votes
0
replies
1.3k
views
RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
17.7 years ago stephen edwards ▴ 10
0
votes
2
replies
1.9k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 17.7 years ago by 52k • written 17.7 years ago by ▴ 680
0
votes
1
reply
1.5k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 17.7 years ago by 67k • written 17.7 years ago by ★ 2.2k
0
votes
0
replies
1.7k
views
Options for spatial normalization? (Oliver Homann)
SNP Microarray Annotation Normalization GO Classification Cancer annotate geneplotter SNP
17.8 years ago Tarca, Adi ▴ 570
0
votes
1
reply
945
views
Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 17.8 years ago by ★ 13k • written 17.8 years ago by ★ 1.3k
0
votes
1
reply
1.1k
views
Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 17.8 years ago by ★ 13k • written 17.8 years ago by ★ 1.3k
0
votes
4
replies
1.9k
views
[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 17.8 years ago by ★ 7.4k • written 17.8 years ago by ★ 6.5k
0
votes
10
replies
2.2k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 18.0 years ago by ▴ 460 • written 18.0 years ago by ▴ 70
0
votes
12
replies
2.3k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 18.0 years ago by ★ 5.5k • written 18.0 years ago by ▴ 460
0
votes
0
replies
1.4k
views
Re: Defining your own chromosome annotations
Microarray geneplotter limma AnnBuilder genomes Microarray geneplotter limma AnnBuilder
19.6 years ago Palmer, Lance ▴ 30
0
votes
1
reply
1.0k
views
Defining your own chromosome annotations
geneplotter genomes geneplotter genomes
updated 19.6 years ago by 21k • written 19.6 years ago by ▴ 30
0
votes
0
replies
1.2k
views
Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
19.7 years ago Yi, Andrew ▴ 20
0
votes
2
replies
1.5k
views
Geneplotter, alongChrom problem
Organism geneplotter Organism geneplotter
updated 19.7 years ago by ★ 13k • written 19.7 years ago by ▴ 540
0
votes
2
replies
1.0k
views
greenred.colors() in geneplotter
geneplotter geneplotter
19.8 years ago michael watson IAH-C ★ 3.4k
0
votes
0
replies
938
views
Affy: chromosomal localization with expression value for of gene lists
Cancer geneplotter Cancer geneplotter
19.8 years ago John Zhang ★ 2.9k
0
votes
2
replies
1.8k
views
Installation Problem on OS X
GO geneplotter graph Rgraphviz pamr globaltest GO geneplotter graph Rgraphviz pamr
updated 20.0 years ago by ▴ 680 • written 20.0 years ago by ▴ 10
0
votes
2
replies
1.5k
views
gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 20.1 years ago by ★ 7.4k • written 20.1 years ago by ▴ 130
50 results • Page 1 of 1
Recent ...
Replies
Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k
You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
Comment: contrast matrix design for a continuous variable by dtzhu337 • 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd by liu.n • 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0
> dim(spe) [1] 19962 425
Votes
Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Awards • All
Popular Question to Ou, Jianhong ★ 1.3k
Popular Question to mikat • 0
Popular Question to joseph.joonsang • 0
Popular Question to Hans-Ulrich Klein ▴ 330
Popular Question to shepherl 4.1k
Locations • All
United States, 6 minutes ago
Bangalore, 38 minutes ago
The Netherlands, 46 minutes ago
France, 49 minutes ago
United States, 55 minutes ago
Traffic: 886 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6