Showing : geneplotter • reset
6
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5
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14k
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Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 10
0
votes
1
reply
1.7k
views
install geneplotter
geneplotter geneplotter
updated 9.8 years ago by 63k • written 9.8 years ago by ★ 12k
0
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0
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1.6k
views
library(\"geneplotter\") fails on load
GO hgu95av2 geneplotter GO hgu95av2 geneplotter
10.4 years ago Guest User ★ 12k
0
votes
0
replies
967
views
geneplotter - buildChromLoc for arrays with no .db
GO geneplotter GO geneplotter
10.8 years ago Lavinia Gordon ▴ 480
0
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1
reply
1.0k
views
geneplotter - buildChromLoc for arrays with no .db package
GO geneplotter GO geneplotter
updated 10.8 years ago by ★ 7.2k • written 10.8 years ago by ▴ 480
0
votes
13
replies
2.0k
views
How to plot NGS data?
GO BSgenome geneplotter PROcess BSgenome genomes GO BSgenome geneplotter PROcess genomes
updated 11.6 years ago by 25k • written 11.6 years ago by ▴ 30
0
votes
1
reply
1.2k
views
Error installing geneplotter
geneplotter geneplotter
updated 11.9 years ago by ★ 8.2k • written 11.9 years ago by ★ 12k
0
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1
reply
1.1k
views
bug info
Microarray Normalization geneplotter graph limma Microarray Normalization geneplotter
updated 12.3 years ago by 6.7k • written 12.3 years ago by ▴ 10
0
votes
3
replies
1.7k
views
Bioconductor / plotting SNPs, runs of homozygosity
SNP geneplotter SNPchip SNP geneplotter SNPchip
updated 13.2 years ago by 6.7k • written 13.2 years ago by ▴ 40
0
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0
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2.2k
views
How to plot gene on their chromosome?
Annotation Cancer geneplotter idiogram rtracklayer Annotation Cancer geneplotter idiogram
14.3 years ago Martin Morgan 25k
0
votes
5
replies
1.5k
views
annotate incompatible with RdbiPgSQL !?!
annotate geneplotter Rdbi RdbiPgSQL annotate geneplotter Rdbi RdbiPgSQL
updated 14.4 years ago by 63k • written 14.4 years ago by ▴ 160
0
votes
0
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789
views
Visulising KEGG pathways using KEGGSOAP - example code
Pathways geneplotter KEGGSOAP biomaRt GEOquery Pathways geneplotter KEGGSOAP biomaRt
14.5 years ago michael watson IAH-C ★ 3.4k
0
votes
5
replies
2.9k
views
From eSet to AffyBatch Object
geneplotter affy geneplotter affy
updated 14.6 years ago by 25k • written 14.6 years ago by ▴ 120
0
votes
3
replies
1.1k
views
Ringo: Error in preprocess() with R-2.7.0, but not with R-2.5.0
probe annotate geneplotter affy vsn Ringo probe annotate geneplotter affy vsn Ringo
updated 15.2 years ago by ▴ 720 • written 15.2 years ago by ▴ 110
0
votes
0
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847
views
Colors in cColor from geneplotter
probe geneplotter probe geneplotter
15.3 years ago Heidi Dvinge ★ 2.0k
0
votes
0
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639
views
buildChromLocation with Drosophila2 Affy arrays
geneplotter geneplotter
15.5 years ago Blanchette, Marco ▴ 10
0
votes
2
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1.0k
views
Rgraphviz edge attributes can't be changed on Mac
Biobase geneplotter Rgraphviz Biobase geneplotter Rgraphviz
updated 15.9 years ago by ▴ 540 • written 15.9 years ago by ★ 1.6k
0
votes
4
replies
2.1k
views
Installing beadarray
annotate geneplotter beadarray AnnotationDbi annotate geneplotter beadarray AnnotationDbi
updated 15.9 years ago by 21k • written 15.9 years ago by ▴ 270
0
votes
1
reply
955
views
Rgraphviz edge attributes can't be changed on Mac
geneplotter Rgraphviz geneplotter Rgraphviz
updated 15.9 years ago by 16k • written 15.9 years ago by ★ 1.6k
0
votes
1
reply
1.2k
views
Problem reading data with beadarray package
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 15.9 years ago by ▴ 460 • written 15.9 years ago by ▴ 10
0
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2
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1.0k
views
vsm2
Survival geneplotter affy vsn limma affyio Survival geneplotter affy vsn limma affyio
updated 16.0 years ago by 13k • written 16.0 years ago by ▴ 70
0
votes
1
reply
969
views
beadarray: combining several beadsummary data objects
Biobase geneplotter affy affyio beadarray Biobase geneplotter affy affyio beadarray
updated 16.0 years ago by ▴ 460 • written 16.0 years ago by ▴ 70
0
votes
4
replies
1.9k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.1 years ago by ▴ 500 • written 16.1 years ago by ★ 1.4k
0
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6
replies
3.1k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 16.1 years ago by ▴ 220 • written 16.1 years ago by ★ 2.2k
0
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0
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1.5k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
16.1 years ago Min Wook Kim ▴ 20
0
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2
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1.0k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 16.1 years ago by ★ 7.2k • written 16.1 years ago by ▴ 30
0
votes
1
reply
1.1k
views
beadarray - combing
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.1 years ago by ▴ 320 • written 16.1 years ago by ▴ 270
0
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1
reply
1.2k
views
ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.1 years ago by ▴ 320 • written 16.2 years ago by ▴ 410
0
votes
3
replies
1.4k
views
beadarray package: problem with bead level data
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.2 years ago by ▴ 40 • written 16.2 years ago by ▴ 270
0
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1
reply
1.1k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
16.3 years ago Steven McKinney ▴ 310
0
votes
1
reply
1.0k
views
beadarray readIllumina suggestions
Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy
updated 16.3 years ago by ▴ 460 • written 16.3 years ago by ▴ 10
0
votes
3
replies
967
views
chromosome plot
zebrafish geneplotter zebrafish geneplotter
updated 16.3 years ago by ★ 7.4k • written 16.3 years ago by ▴ 160
0
votes
4
replies
2.0k
views
smoothScatter axis limits
annotate geneplotter annotate geneplotter
updated 16.3 years ago by ★ 1.9k • written 16.3 years ago by ▴ 250
0
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0
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1.0k
views
RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
16.5 years ago stephen edwards ▴ 10
0
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2
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1.4k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 16.5 years ago by 48k • written 16.5 years ago by ▴ 680
0
votes
1
reply
1.2k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 16.5 years ago by 63k • written 16.5 years ago by ★ 2.2k
0
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0
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1.5k
views
Options for spatial normalization? (Oliver Homann)
SNP Microarray Annotation Normalization GO Classification Cancer annotate geneplotter SNP
16.6 years ago Tarca, Adi ▴ 570
0
votes
1
reply
677
views
Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 16.6 years ago by 13k • written 16.6 years ago by ★ 1.3k
0
votes
1
reply
807
views
Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 16.6 years ago by 13k • written 16.6 years ago by ★ 1.3k
0
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4
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1.5k
views
[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by 6.5k
0
votes
10
replies
1.6k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 16.8 years ago by ▴ 460 • written 16.8 years ago by ▴ 70
0
votes
12
replies
1.6k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 16.8 years ago by ★ 5.5k • written 16.8 years ago by ▴ 460
0
votes
0
replies
1.2k
views
Re: Defining your own chromosome annotations
Microarray geneplotter limma AnnBuilder genomes Microarray geneplotter limma AnnBuilder
18.4 years ago Palmer, Lance ▴ 30
0
votes
1
reply
791
views
Defining your own chromosome annotations
geneplotter genomes geneplotter genomes
updated 18.4 years ago by 21k • written 18.4 years ago by ▴ 30
0
votes
0
replies
962
views
Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
18.5 years ago Yi, Andrew ▴ 20
0
votes
2
replies
1.2k
views
Geneplotter, alongChrom problem
Organism geneplotter Organism geneplotter
updated 18.5 years ago by 13k • written 18.5 years ago by ▴ 540
0
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2
replies
722
views
greenred.colors() in geneplotter
geneplotter geneplotter
18.6 years ago michael watson IAH-C ★ 3.4k
0
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0
replies
690
views
Affy: chromosomal localization with expression value for of gene lists
Cancer geneplotter Cancer geneplotter
18.6 years ago John Zhang ★ 2.9k
0
votes
2
replies
1.5k
views
Installation Problem on OS X
GO geneplotter graph Rgraphviz pamr globaltest GO geneplotter graph Rgraphviz pamr
updated 18.9 years ago by ▴ 680 • written 18.9 years ago by ▴ 10
0
votes
2
replies
1.1k
views
gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ▴ 130
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Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k
I should also point out that you can find this out by yourself by going to [ensembl][1], clicking on the Biomart link, and then scrolling t…
Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k
It's my understanding that the archived Biomart data are not complete, which is likely why you cannot get sequences. But you apparently jus…
Comment: ComBat_seq function in sva package does not return a matrix by Federico ▴ 10
Thanks for your help, problem solved :)
Answer: ComBat_seq function in sva package does not return a matrix by ATpoint ★ 3.4k
That happens if your `x` is a data.frame rather than a matrix. It is listed under the Q&A section in https://github.com/zhangyuqing/ComBat-…
Answer: error running exp2grn by Fabricio Almeida-Silva ▴ 40
Hi, Adriana. It seems like the gene IDs you specified in `Host13tfs$Protein.ID` do not match any gene IDs in the row names of your expr…
Votes
ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
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