Bioconductor Genes

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1.1k

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cnv genes genomic ranges splitByOverlap

updated 7.1 years ago by Martin Morgan 25k • written 7.1 years ago by julrodr80 ▴ 30

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1.3k

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edger differential expression genes fold change

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by ilovesuperheroes1993 • 0

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700

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deseq2 genes expression

updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by UserAnonyme • 0

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1.1k

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topGO significant enrichment genes IDs

5.3 years ago David ROUX ▴ 20

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916

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deseq2 variance genes

updated 6.5 years ago by Michael Love 41k • written 6.5 years ago by hs.lansdell ▴ 20

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607

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R microRNA genes binding Site

4.8 years ago pengu447 • 0

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878

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GeneSetEnrichment genes genetogo

updated 23 months ago by Basti ▴ 780 • written 23 months ago by Noy • 0

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1.2k

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datasets genes gene expression

updated 8.7 years ago by Steve Lianoglou ★ 13k • written 8.7 years ago by vavecilla • 0

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498

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DESeq2 genes Differential expressed

12 months ago • updated 11 months ago Syed Zaheer ▴ 10

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2.4k

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heatmap rownames genes

8.6 years ago johnlee.johnson • 0

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2.6k

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deseq2 wald lrt genes significance

updated 7.9 years ago by Michael Love 41k • written 7.9 years ago by aziza ▴ 20

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701

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deseq2 genes

updated 7.7 years ago by Michael Love 41k • written 7.8 years ago by silviajserrano • 0

12 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Votes

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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