Showing : genetics • reset
0
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5
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2.1k
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downloading different kinds of microarray data
Sequencing Microarray Genetics Annotation gpls convert GEOquery GEOmetadb Sequencing gpls
updated 13.7 years ago by ▴ 30 • written 13.7 years ago by 21k
0
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3
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1.2k
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GO analysis
Genetics Annotation GO Genetics Annotation GO
updated 20.4 years ago by ★ 1.1k • written 20.4 years ago by ▴ 100
0
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3
replies
1.2k
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gene2pathway retrain: which model is more complete?
Genetics Coverage biomaRt gene2pathway Genetics Coverage biomaRt gene2pathway
13.7 years ago Bogdan ▴ 50
0
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5
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2.4k
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mRNA-seq cross-species analysis, is it possible?
Genetics Normalization Proteome DESeq Genetics Normalization Proteome DESeq
updated 12.8 years ago by ▴ 20 • written 12.8 years ago by ▴ 370
0
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3
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1.4k
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package simpleaffy
Genetics affy simpleaffy Genetics affy simpleaffy
updated 20.2 years ago by ★ 3.9k • written 20.2 years ago by ▴ 20
0
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3
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1.1k
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Limma question
Genetics limma Genetics limma
updated 18.3 years ago by ★ 6.0k • written 18.3 years ago by ▴ 310
0
votes
7
replies
1.7k
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Seeking assistance on ROC
Genetics ROC Genetics ROC
14.3 years ago Susan Bosco ▴ 80
0
votes
8
replies
2.8k
views
Expected number of DE genes?
Genetics edgeR DESeq2 Genetics edgeR DESeq2
updated 9.8 years ago by ▴ 750 • written 9.8 years ago by ▴ 140
0
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3
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1.2k
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RE ChIPPEAKANNO
miRNA Genetics ChIPpeakAnno miRNA Genetics ChIPpeakAnno
11.7 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
1.5k
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R: Pathway Information
Genetics Pathways Cancer probe globaltest Genetics Pathways Cancer probe globaltest
updated 18.9 years ago by ▴ 360 • written 18.9 years ago by ★ 2.9k
0
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2
replies
1.1k
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RE: Display scale on hclust heatmap (Warnes, Gregory R )
Genetics Genetics
20.5 years ago Warnes, Gregory R ▴ 460
0
votes
2
replies
1.1k
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just.gcrma and normalisation
Genetics affy gcrma Genetics affy gcrma
updated 17.9 years ago by ▴ 200 • written 17.9 years ago by ▴ 310
0
votes
2
replies
1.1k
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AnnBuilder subscript out of bounds error
Microarray Genetics Annotation GO probe AnnBuilder PROcess Microarray Genetics Annotation
updated 18.2 years ago by ▴ 780 • written 18.2 years ago by ▴ 20
0
votes
2
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1.0k
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Partial F-test using LIMMA
Genetics limma Genetics limma
updated 19.2 years ago by ▴ 110 • written 19.2 years ago by ▴ 20
0
votes
2
replies
1.1k
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multtest library load problem
Genetics Cancer Genetics Cancer
updated 22.0 years ago by ▴ 280 • written 22.0 years ago by ▴ 10
0
votes
2
replies
1.5k
views
strange layering in PCA after removeBatchEffect()
Genetics limma Genetics limma
updated 10.5 years ago by ▴ 10 • written 10.5 years ago by ▴ 90
0
votes
2
replies
1.6k
views
a workflow of population genomic operations/analysis using bioconductor
Genetics genomes Genetics genomes
updated 13.5 years ago by ★ 11k • written 13.5 years ago by ▴ 290
0
votes
4
replies
1.5k
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snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 12.2 years ago by ▴ 20 • written 12.2 years ago by ▴ 30
0
votes
2
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1.3k
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Error messege in edgeR: Error in t(y) + prior.count.scaled : non-conformable arrays
Genetics Genetics
updated 10.3 years ago by 50k • written 10.3 years ago by ▴ 10
0
votes
2
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1.4k
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DESeq variance stabilisation and clustering
Genetics Clustering PROcess DESeq Genetics Clustering PROcess DESeq
updated 13.2 years ago by ▴ 30 • written 13.2 years ago by ▴ 20
0
votes
2
replies
825
views
DESeq estimateDispersion options for lower depth
Genetics GO Genetics GO
12.2 years ago Aggarwal, Praful ▴ 50
2
votes
7
replies
5.0k
views
Extend GRanges start/end
Genetics GenomicFeatures Genetics GenomicFeatures
updated 11.6 years ago by ★ 11k • written 11.6 years ago by ▴ 510
0
votes
2
replies
828
views
problem with qPCR raw data
Genetics Genetics
updated 14.3 years ago by ★ 2.0k • written 14.3 years ago by ▴ 60
3
votes
5
replies
2.3k
views
How to Find Common Dysregulated Genes in Two or More Sets of Microarray Data?
disease genetics micro array data microarray
updated 9.1 years ago by 50k • written 9.1 years ago by ▴ 20
0
votes
2
replies
938
views
Help to understand logistic model used in MEDME
Genetics MEDME Genetics MEDME
updated 14.5 years ago by ★ 4.2k • written 14.5 years ago by ▴ 80
0
votes
3
replies
2.7k
views
Outlier detection in DEseq
Genetics DESeq Genetics DESeq
updated 13.6 years ago by ★ 3.7k • written 13.6 years ago by ▴ 20
0
votes
3
replies
1.2k
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Annotation of U95av2 array
Microarray Genetics Annotation GO Cancer hgu95av2 probe affy AnnBuilder PROcess Genetics
updated 17.1 years ago by ▴ 870 • written 17.1 years ago by 65k
1
vote
3
replies
3.5k
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Limma: correct calculation of B statistics (log odds)
Microarray Genetics limma limmaGUI Microarray Genetics limma limmaGUI
updated 18.1 years ago by ★ 1.9k • written 18.1 years ago by 50k
0
votes
2
replies
956
views
Could limma be as good as GeneSpring in nomalization?
Genetics limma Genetics limma
updated 19.5 years ago by ★ 1.8k • written 19.5 years ago by ▴ 90
0
votes
2
replies
1.0k
views
DESeq - non-differential expression
Sequencing miRNA Genetics DESeq Sequencing miRNA Genetics DESeq
updated 13.1 years ago by ▴ 180 • written 13.1 years ago by ▴ 10
0
votes
2
replies
1.2k
views
limma Normalization question
Genetics Normalization limma GeneSpring limmaGUI Genetics Normalization limma GeneSpring
18.5 years ago Gordon Smyth 50k
0
votes
2
replies
2.3k
views
limma, spot and technical replicates
Genetics limma limmaGUI Genetics limma limmaGUI
updated 18.5 years ago by ▴ 150 • written 18.5 years ago by ▴ 110
0
votes
2
replies
774
views
Custom CDFs from U mich for GeneChip Analysis
Genetics Cancer Genetics Cancer
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 50
0
votes
7
replies
1.5k
views
Plate or print-order effects - limma
Genetics limma Genetics limma
updated 17.4 years ago by ▴ 500 • written 17.4 years ago by 50k
0
votes
4
replies
1.7k
views
allen brain atlas
Genetics Annotation BRAIN Genetics Annotation BRAIN
updated 15.7 years ago by 25k • written 15.8 years ago by ▴ 60
0
votes
3
replies
1.4k
views
Clustering and gene modules
Genetics Clustering Cancer goCluster Genetics Clustering Cancer goCluster
updated 19.4 years ago by 21k • written 19.4 years ago by ▴ 40
0
votes
4
replies
13k
views
Normalization by DEseq
Genetics Normalization DESeq Genetics Normalization DESeq
updated 6.2 years ago by • 0 • written 13.6 years ago by ▴ 20
1
vote
12
replies
3.4k
views
Problem running summarizeOverlaps()
Genetics Genetics
updated 8.3 years ago by ▴ 10 • written 10.0 years ago by ▴ 140
0
votes
1
reply
934
views
Problems with hgu133acdf...!
Genetics cdf probe affy Genetics cdf probe affy
updated 20.7 years ago by 65k • written 20.7 years ago by ▴ 30
0
votes
1
reply
1.4k
views
Re: Single channel normalization
Genetics Normalization GO limma Genetics Normalization GO limma
updated 20.7 years ago by ▴ 60 • written 20.7 years ago by ▴ 30
0
votes
1
reply
847
views
Build an Annotation with GO2ALLPROBES
Genetics Annotation AnnBuilder GOstats Genetics Annotation AnnBuilder GOstats
updated 18.2 years ago by ▴ 780 • written 18.2 years ago by ▴ 20
0
votes
3
replies
1.4k
views
Bioconductor Digest, Vol 66, Issue 2 Message 7 (apologies; long and veering off topic)
Genetics Annotation Genetics Annotation
updated 15.8 years ago by ▴ 910 • written 15.8 years ago by ▴ 90
0
votes
1
reply
809
views
Bug in Biobase 1.3.22
Genetics Genetics
updated 21.0 years ago by ★ 3.9k • written 21.0 years ago by ▴ 10
0
votes
1
reply
1.3k
views
R: Degradation plots - Affy package
Transcription qPCR Genetics probe affy Transcription qPCR Genetics probe affy
updated 17.7 years ago by ▴ 360 • written 17.7 years ago by ▴ 10
0
votes
1
reply
1.2k
views
ReadAffy problems
Genetics Biophysics affy Genetics Biophysics affy
updated 21.1 years ago by ★ 2.3k • written 21.1 years ago by ▴ 30
0
votes
1
reply
2.0k
views
estimateDispersions in DESeq
Genetics graph DESeq Genetics graph DESeq
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ▴ 10
0
votes
1
reply
957
views
getBioC problem: reposTools
Genetics reposTools Genetics reposTools
updated 21.2 years ago by ★ 3.9k • written 21.2 years ago by ▴ 1000
0
votes
1
reply
920
views
Help to analyse a complex experiment
Genetics Normalization vsn limma Genetics Normalization vsn limma
updated 18.3 years ago by ★ 6.0k • written 18.3 years ago by ▴ 770
0
votes
1
reply
1.2k
views
Problem with ljava when I run update.packages2
Genetics RMAGEML Genetics RMAGEML
updated 18.4 years ago by 25k • written 18.4 years ago by ▴ 770
0
votes
3
replies
1.4k
views
[TimeCourse Package] Warnings message
Genetics TimeCourse timecourse Genetics TimeCourse timecourse
updated 18.3 years ago by ▴ 440 • written 18.3 years ago by ▴ 770
50 results • Page 1 of 1
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
Thank you for advice, you mean I need to add: countdata_rat <- data.frame(condition = as.factor(METADATA_RAT$treatment)) and total: dds_…
Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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