Showing : genomes • reset
3
votes
4
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1.2k
views
Limit on number of sequence files for forging a BSgenome
BSgenome BSgenome genomes BSgenome BSgenome genomes
updated 11.1 years ago by ★ 6.5k • written 11.1 years ago by ▴ 220
2
votes
3
replies
5.1k
views
Linkage disequilibrium with 1000 Genomes/HapMap
HapMap genomes HapMap genomes
9.8 years ago enricoferrero ▴ 660
1
vote
1
reply
406
views
MSc student
genomes
updated 15 months ago by ▴ 780 • written 15 months ago by • 0
1
vote
1
reply
1.6k
views
GenomeViz
Proteomics genomes Proteomics genomes
updated 8.2 years ago by • 0 • written 19.3 years ago by ▴ 80
1
vote
0
replies
1.4k
views
Job: Bioinformatician/Computational Biologist - Dublin City, Ireland
bioinformatician job computational biology genomes pathways machine learning Job
6.5 years ago bulfin.triona ▴ 10
0
votes
1
reply
934
views
Defining your own chromosome annotations
geneplotter genomes geneplotter genomes
updated 19.0 years ago by 21k • written 19.0 years ago by ▴ 30
0
votes
0
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1.3k
views
Re: Defining your own chromosome annotations
Microarray geneplotter limma AnnBuilder genomes Microarray geneplotter limma AnnBuilder
19.0 years ago Palmer, Lance ▴ 30
0
votes
0
replies
941
views
PhD Studentship: Spatiotemporal Organisation of Gene Expression
genomes attract genomes attract
18.8 years ago Jan T. Kim ▴ 70
0
votes
0
replies
1.2k
views
bioMart 1.6.3 missing mysql=TRUE in useMart
Microarray Annotation GO annotate affy biomaRt genomes Microarray Annotation GO annotate
17.6 years ago mkeehan@lic.co.nz ▴ 10
0
votes
2
replies
1.2k
views
error from rsamtools on 1000 genomes
Cancer HapMap Rsamtools genomes Cancer HapMap Rsamtools genomes
updated 13.8 years ago by 25k • written 13.8 years ago by ▴ 100
0
votes
0
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1.3k
views
Bioinformatics course - October 2011 Registration is now open
Microarray Cancer biomaRt ArrayExpress genomes SANTA Microarray Cancer biomaRt genomes
12.6 years ago Claude Chelala ▴ 40
0
votes
1
reply
872
views
New bosTau4 genome
BSgenome BSgenome genomes BSgenome BSgenome genomes
updated 15.5 years ago by ▴ 500 • written 15.5 years ago by 16k
0
votes
0
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845
views
Intermediate BioC Course 21-23 Jan 09: Analyzing Microarray and Sequencing Experiments
Microarray genomes Microarray genomes
15.4 years ago Patrick Aboyoun ★ 1.6k
0
votes
1
reply
747
views
Reminder: Intermediate BioC Course 21-23 Jan 09
Sequencing Microarray genomes Sequencing Microarray genomes
15.3 years ago Patrick Aboyoun ★ 1.6k
0
votes
2
replies
639
views
comparing multiple individual genomes in bioc?
genomes genomes
updated 15.3 years ago by ★ 6.5k • written 15.3 years ago by ★ 1.1k
0
votes
4
replies
1.5k
views
rtracklayer and UCSC
rtracklayer genomes rtracklayer genomes
updated 15.0 years ago by ▴ 620 • written 15.0 years ago by ★ 6.5k
0
votes
2
replies
1.1k
views
biomaRt access to ensemble genomes 11 fungi_mart_11
genomes genomes
updated 12.4 years ago by ▴ 60 • written 12.4 years ago by ★ 1.6k
0
votes
1
reply
839
views
about the annotate the new genome for geneplotter/genegraph
Annotation genomes Annotation genomes
updated 14.7 years ago by ▴ 140 • written 14.8 years ago by ▴ 10
0
votes
0
replies
1.0k
views
Ensembl mart release 56: Useful information
GO Anopheles gambiae Drosophila melanogaster genomes GO Anopheles gambiae genomes
14.6 years ago Rhoda Kinsella ▴ 660
0
votes
0
replies
896
views
Position for Computational Scientist at EMBL
Sequencing Genetics genomes Sequencing Genetics genomes
14.3 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
759
views
need output to contain probe x, y coordinates on array - AffyTiling
probe PROcess genomes probe PROcess genomes
14.3 years ago Ann Loraine ▴ 110
0
votes
0
replies
752
views
need output to contain probe x, y coordinates on array - AffyTiling
Microarray probe PROcess genomes Microarray probe PROcess genomes
14.3 years ago Charles Danko ▴ 40
0
votes
0
replies
1.3k
views
Computational Biology Positions at EMBL (Heidelberg)
Sequencing Genetics genomes Sequencing Genetics genomes
14.1 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
919
views
ChIPpeakAnno Paper - Example Dataset not found
Transcription ChIPSeq Annotation chipseq genomes Transcription ChIPSeq Annotation chipseq
13.8 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
1.7k
views
Bacterial genomics
Sequencing Microarray qPCR genomes Sequencing Microarray qPCR genomes
updated 13.7 years ago by 16k • written 13.7 years ago by ▴ 30
0
votes
2
replies
2.0k
views
E. coli annotation to map?
biomaRt genomes biomaRt genomes
updated 13.7 years ago by ▴ 500 • written 13.7 years ago by ▴ 40
0
votes
1
reply
728
views
Human genomic sequences
genomes genomes
updated 13.5 years ago by 6.7k • written 13.5 years ago by ▴ 30
0
votes
2
replies
1.6k
views
a workflow of population genomic operations/analysis using bioconductor
Genetics genomes Genetics genomes
updated 13.4 years ago by ★ 11k • written 13.4 years ago by ▴ 290
0
votes
3
replies
1.0k
views
how to go from an short read alignment file to a SNPs table for population genetic analysis
genomes genomes
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 290
0
votes
0
replies
898
views
how to go from an short read alignment file to a SNPs table for population genetic analysis
convert genomes convert genomes
13.4 years ago Sean Davis 21k
0
votes
0
replies
956
views
How do I use biomaRt to get upstreamFlank Genomic Sequence for many Genomes?
Alignment biomaRt genomes Alignment biomaRt genomes
13.4 years ago Noah Dowell ▴ 410
0
votes
8
replies
1.6k
views
Gene Lists and Genomes
GO genomes GO genomes
updated 13.0 years ago by ★ 4.2k • written 13.0 years ago by ▴ 240
0
votes
4
replies
1.1k
views
IRanges: Request for a "step" argument in runsum
Cancer IRanges genomes Cancer IRanges genomes
updated 13.0 years ago by ★ 11k • written 13.0 years ago by ▴ 100
0
votes
1
reply
736
views
IRanges: Request for a "step" argument in runsum
Cancer PROcess IRanges genomes Cancer PROcess IRanges genomes
updated 12.8 years ago by ★ 11k • written 12.8 years ago by 16k
0
votes
4
replies
1.3k
views
IRanges: Request for a "step" argument in runsum
Coverage Annotation Cancer PROcess IRanges genomes Coverage Annotation Cancer PROcess
updated 12.8 years ago by 16k • written 12.8 years ago by ▴ 100
0
votes
0
replies
1.7k
views
Postdoctoral positions at EMBL
Sequencing Genetics GO Network Cancer genomes Sequencing Genetics GO Network Cancer
12.6 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
926
views
Conference announcement: Omics and Personalised Health, EMBL Heidelberg, 16-18 February 2012
genomes genomes
12.6 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
936
views
the procedure to annotate assembled transcriptom
annotate genomes annotate genomes
updated 12.5 years ago by 21k • written 12.5 years ago by ★ 2.0k
0
votes
1
reply
813
views
Addition of Orangutan genome to BSgenomes
Genetics BSgenome BSgenome genomes Genetics BSgenome BSgenome genomes
updated 12.4 years ago by ★ 6.8k • written 12.5 years ago by ▴ 10
0
votes
1
reply
707
views
MEDIPS R package reference genomes
genomes MEDIPS genomes MEDIPS
updated 12.3 years ago by ★ 6.8k • written 12.3 years ago by ▴ 220
0
votes
13
replies
2.3k
views
How to plot NGS data?
GO BSgenome geneplotter PROcess BSgenome genomes GO BSgenome geneplotter PROcess genomes
updated 12.2 years ago by 25k • written 12.2 years ago by ▴ 30
0
votes
3
replies
4.8k
views
how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 22 months ago by • 0 • written 12.2 years ago by ★ 7.2k
0
votes
6
replies
1.5k
views
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt GenomicFeatures genomes Cancer Organism biomaRt GenomicFeatures
updated 12.1 years ago by ▴ 660 • written 12.1 years ago by 16k
0
votes
0
replies
1.3k
views
Job Announcement: Genome Informatics
Sequencing Genetics genomes Sequencing Genetics genomes
12.1 years ago Jenny Drnevich ★ 2.0k
0
votes
2
replies
1.2k
views
Finding coding SNPs with predictCoding
SNP Annotation BSgenome ctc BSgenome cycle genomes SNP Annotation BSgenome ctc BSgenome
updated 12.1 years ago by ★ 1.7k • written 12.1 years ago by ★ 6.8k
0
votes
1
reply
1.0k
views
Course: R / Bioconductor for High-Throughput Sequence Analysis
Annotation Cancer genomes Annotation Cancer genomes
12.1 years ago Martin Morgan 25k
0
votes
0
replies
1.3k
views
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt genomes Cancer Organism biomaRt genomes
12.0 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
917
views
Finding coding SNPs with predictCoding
SNP Annotation BSgenome BSgenome GenomicFeatures cycle genomes SNP Annotation BSgenome
updated 12.0 years ago by ★ 1.7k • written 12.0 years ago by ★ 6.8k
0
votes
0
replies
1.3k
views
[Engineers for ensemblgenomes.org #251937] BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info …
Drosophila melanogaster TranscriptDb biomaRt GenomicFeatures genomes Drosophila melanogaster
11.9 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
1.5k
views
Gviz: Error plotting C.elegans ideogram
ideogram genomes Gviz ideogram genomes Gviz
11.9 years ago • updated 11.8 years ago Michael Dondrup ▴ 550
50 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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