Bioconductor GenomicInteractions

Showing : genomicInteractions • reset

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636

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InteractionSet subsetByOverlaps GenomicInteractions

16 months ago LaureTomas ▴ 10

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746

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

3.3 years ago koushik • 0

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1.8k

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diffHic GenomicInteractions edgeR HiC cooler

updated 4.2 years ago by Aaron Lun ★ 28k • written 4.2 years ago by Marco Blanchette ▴ 30

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1.3k

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duplicate GenomicInteractions

4.5 years ago dogancan • 0

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957

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GenomicInteractions

4.6 years ago chang.jiaming • 0

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1.3k

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GenomicInteractions gviz

updated 4.7 years ago by liz.ingsimmons ▴ 140 • written 4.7 years ago by Marco Blanchette ▴ 30

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919

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genomicInteractions annotation

updated 5.4 years ago by liz.ingsimmons ▴ 140 • written 5.4 years ago by ls760 • 0

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1.6k

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GenomicInteractions Gviz

updated 5.5 years ago by liz.ingsimmons ▴ 140 • written 5.5 years ago by Nik dAK ▴ 10

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genomicinteractions gviz interactionset

updated 5.9 years ago by liz.ingsimmons ▴ 140 • written 5.9 years ago by ferbecneu • 0

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1.6k

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genomicinteractions

7.2 years ago • updated 7.1 years ago sarvesh.nikumbh ▴ 10

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2.9k

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gviz genomicinteractions

8.6 years ago enricoferrero ▴ 660

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genomicinteractions GRanges

updated 8.7 years ago by liz.ingsimmons ▴ 140 • written 8.7 years ago by tangming2005 ▴ 200

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2.3k

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GenomicInteractions

updated 8.8 years ago by Malcolm Perry ▴ 40 • written 8.9 years ago by tangming2005 ▴ 200

13 results • Page 1 of 1

Recent ...

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Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k