Showing : ggtree • reset
2
votes
7
replies
2.3k
views
Visualize lineage tree using ggtree
ggtree lineage
7.8 years ago • updated 7.7 years ago yun YAN ▴ 20
2
votes
3
replies
5.3k
views
Error during EBImage installation
ebimage ggtree package installation
updated 7.0 years ago by ▴ 750 • written 7.0 years ago by ▴ 10
9
votes
8
replies
6.7k
views
News: new package `ggtree` in devel branch
ggtree phylogenetic News
updated 9.3 years ago by ▴ 10 • written 9.3 years ago by ★ 1.2k
6
votes
2
replies
4.2k
views
making tree from NCBI taxonomy data for ggtree
ggtree
updated 4.3 years ago by • 0 • written 8.1 years ago by ▴ 40
0
votes
1
reply
2.1k
views
ggtree facet_plot question using geom_boxplot to plot abundance data corresponding to tree tips
ggtree ggplot2 phyloseq geom_boxplot facet_plot
updated 7.2 years ago by ★ 1.2k • written 7.2 years ago by • 0
1
vote
2
replies
1.7k
views
EBImage cannot read .png images from Image.R
ebimage ggtree
updated 6.9 years ago by ▴ 750 • written 6.9 years ago by • 0
0
votes
1
reply
1.9k
views
ggtree: time-scaled tree s
phylogenetic ggtree calibration fossils times-scale
updated 6.7 years ago by ★ 1.2k • written 6.7 years ago by • 0
2
votes
2
replies
1.5k
views
Something wrong with my Bioconductor installation? ggtree cannot read any tree
ggtree
updated 6.1 years ago by ▴ 130 • written 6.1 years ago by • 0
5
votes
3
replies
12k
views
ggtree - trouble displaying longer label names
ggtree
updated 8.7 years ago by ★ 1.2k • written 8.7 years ago by ▴ 150
0
votes
1
reply
2.1k
views
Plotting with ggtree fails after midpoint rooting
ggtree
updated 8.6 years ago by ★ 1.2k • written 8.6 years ago by • 0
0
votes
1
reply
1.5k
views
Error displayed when trying to annotate tree with boostrap values and Phylopic
ggtree
updated 7.7 years ago by ★ 1.2k • written 7.7 years ago by • 0
0
votes
1
reply
1.6k
views
tip_glom and annotations?
ggtree treeio phyloseq annotation tip_glom
updated 6.3 years ago by ★ 1.2k • written 6.3 years ago by • 0
0
votes
1
reply
1.4k
views
Highligting specific tips/taxa with asterisk using ggtree
ggtree
updated 5.0 years ago by ★ 1.2k • written 5.3 years ago by • 0
3
votes
3
replies
1.1k
views
How can I use 'geom_taxalink()' with the circular layout in the 'ggtree' package in R?
r ggtree phylogeny
updated 3.8 years ago by ★ 1.2k • written 3.9 years ago by ▴ 10
1
vote
4
replies
3.6k
views
ggtree functions suddenly stopped working: "Error in offspring.tbl_tree_item(..."
ggtree
updated 10 months ago by • 0 • written 10 months ago by • 0
2
votes
3
replies
8.6k
views
ggtree install
ggtree rvcheck
updated 2.6 years ago by • 0 • written 2.7 years ago by ▴ 10
2
votes
1
reply
612
views
Latest version of ggtree (3.6.2) unavailable on Anaconda. Only 3.6.0 exists.
ggtree
updated 13 months ago by 3.9k • written 13 months ago by ▴ 10
0
votes
0
replies
755
views
How to place jplace Querries from EPA RAxML on the tree as branches in Teeio/ggtree?
treeio EPA jplace RAxML ggtree
3.2 years ago Vincent • 0
0
votes
1
reply
1.4k
views
[ NEED HELP >:( ] ggtree Installation Error
ggtree
updated 20 months ago by 3.9k • written 20 months ago by • 0
0
votes
0
replies
441
views
Using a clustree object to draw a "classical" dendogram
ggplot dendogram ggtreeExtra clustree ggtree
13 months ago christian.dina • 0
0
votes
3
replies
3.4k
views
Unable to reroot RAxML tree with ggtree
ggtree raxml reroot tree
6.3 years ago kevin.liam.keegan • 0
0
votes
3
replies
741
views
Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
13 months ago christian.dina • 0
2
votes
0
replies
1.2k
views
News: ggtree published in MEE
ggtree News
7.7 years ago Guangchuang Yu ★ 1.2k
0
votes
1
reply
1.7k
views
How to save changes on a phylogeneitc tree using ggtree and treeio?
ggtree treeio
5.9 years ago jdimopoulos21 • 0
0
votes
0
replies
1.0k
views
ggtree, ggimage : issue with radial rotation of external image files around circular phylogeny
ggimage ggtree
3.0 years ago moria.robinson • 0
0
votes
0
replies
131
views
ggtree tip label position (depth)
ggtree
5 weeks ago Roope • 0
26 results • Page 1 of 1
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Awards • All
Popular Question to euge.eugenio ▴ 20
Popular Question to Dario Strbenac ★ 1.5k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Locations • All
United States, 59 minutes ago
India, 1 hour ago
Melbourne, Australia, 1 hour ago
United States, 2 hours ago
United States, 3 hours ago
Traffic: 418 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6